Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   WMY90_RS00345 Genome accession   NZ_CP150875
Coordinates   62521..62964 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 57521..67964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS00325 (WMY90_00325) - 58044..58796 (-) 753 Protein_54 NUDIX hydrolase -
  WMY90_RS00330 (WMY90_00330) - 58860..59966 (-) 1107 Protein_55 AAA family ATPase -
  WMY90_RS00335 (WMY90_00335) gdhA 60310..61662 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  WMY90_RS00340 (WMY90_00340) - 61920..62330 (+) 411 WP_011680804.1 peptide deformylase -
  WMY90_RS00345 (WMY90_00345) rcrR 62521..62964 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  WMY90_RS00350 (WMY90_00350) rcrP 62968..64782 (+) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS00355 (WMY90_00355) rcrQ 64772..66550 (+) 1779 WP_022096860.1 ABC transporter ATP-binding protein Regulator
  WMY90_RS00360 (WMY90_00360) - 66706..66954 (+) 249 WP_341276279.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=973203 WMY90_RS00345 WP_002945408.1 62521..62964(+) (rcrR) [Streptococcus thermophilus strain TCI125]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=973203 WMY90_RS00345 WP_002945408.1 62521..62964(+) (rcrR) [Streptococcus thermophilus strain TCI125]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment