Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   WMZ02_RS14620 Genome accession   NZ_CP150864
Coordinates   3111481..3111996 (-) Length   171 a.a.
NCBI ID   WP_346338072.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3106481..3116996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMZ02_RS14605 (WMZ02_14605) aroB 3107862..3108962 (-) 1101 WP_025522122.1 3-dehydroquinate synthase -
  WMZ02_RS14610 (WMZ02_14610) aroK 3108994..3109512 (-) 519 WP_005381319.1 shikimate kinase AroK -
  WMZ02_RS14615 (WMZ02_14615) pilQ 3109701..3111449 (-) 1749 WP_025442303.1 type IV pilus secretin PilQ family protein Machinery gene
  WMZ02_RS14620 (WMZ02_14620) pilP 3111481..3111996 (-) 516 WP_346338072.1 pilus assembly protein PilP Machinery gene
  WMZ02_RS14625 (WMZ02_14625) pilO 3111986..3112579 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  WMZ02_RS14630 (WMZ02_14630) pilN 3112572..3113150 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  WMZ02_RS14635 (WMZ02_14635) pilM 3113134..3114150 (-) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene
  WMZ02_RS14640 (WMZ02_14640) - 3114293..3116863 (+) 2571 WP_346338073.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18928.09 Da        Isoelectric Point: 10.5314

>NTDB_id=973188 WMZ02_RS14620 WP_346338072.1 3111481..3111996(-) (pilP) [Vibrio parahaemolyticus strain NJIFDCVp7]
MRNKSLLMVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVTRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=973188 WMZ02_RS14620 WP_346338072.1 3111481..3111996(-) (pilP) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGAGAAATAAATCTTTGCTGATGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGTCAGGCGCGACGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTAGCGT
ATGCCCCAGAAGTGACGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.211

100

0.842
  pilP Vibrio cholerae strain A1552

58.14

100

0.585

Multiple sequence alignment