Detailed information NTG0973181

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WMZ02_RS13530
• Genome accession: NZ_CP150864
• Coordinates: 2891781..2892770 (-)
• Length: 329 a.a.
• NCBI ID: WP_025510234.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain NJIFDCVp7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2886781..2897770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMZ02_RS13515 (WMZ02_13515)	recA	2887329..2888372 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
WMZ02_RS13520 (WMZ02_13520)	pncC	2888573..2889055 (-)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
WMZ02_RS13525 (WMZ02_13525)	mutS	2889140..2891701 (+)	2562	WP_025610927.1	DNA mismatch repair protein MutS	-
WMZ02_RS13530 (WMZ02_13530)	rpoS	2891781..2892770 (-)	990	WP_025510234.1	RNA polymerase sigma factor RpoS	Regulator
WMZ02_RS13535 (WMZ02_13535)	-	2892851..2893774 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
WMZ02_RS13540 (WMZ02_13540)	-	2893789..2894415 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
WMZ02_RS13545 (WMZ02_13545)	surE	2894415..2895191 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
WMZ02_RS13550 (WMZ02_13550)	truD	2895191..2896234 (-)	1044	WP_346338046.1	tRNA pseudouridine(13) synthase TruD	-
WMZ02_RS13555 (WMZ02_13555)	ispF	2896281..2896757 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WMZ02_RS13560 (WMZ02_13560)	ispD	2896775..2897479 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
WMZ02_RS13565 (WMZ02_13565)	ftsB	2897481..2897762 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37590.41 Da
• Isoelectric Point: 4.6096

>NTDB_id=973181 WMZ02_RS13530 WP_025510234.1 2891781..2892770(-) (rpoS) [Vibrio parahaemolyticus strain NJIFDCVp7]
MSISNTVSKVEEFEYDNTSETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=973181 WMZ02_RS13530 WP_025510234.1 2891781..2892770(-) (rpoS) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATACGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTAGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851