Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   WMZ02_RS09655 Genome accession   NZ_CP150864
Coordinates   2049865..2051286 (+) Length   473 a.a.
NCBI ID   WP_346337933.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2044865..2056286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMZ02_RS09635 (WMZ02_09635) - 2044925..2045677 (-) 753 WP_180820271.1 adenosylcobinamide-GDP ribazoletransferase -
  WMZ02_RS09640 (WMZ02_09640) cobT 2045722..2046765 (-) 1044 WP_346337931.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  WMZ02_RS09645 (WMZ02_09645) - 2047448..2048143 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  WMZ02_RS09650 (WMZ02_09650) - 2048336..2049709 (+) 1374 WP_346337932.1 L-cystine transporter -
  WMZ02_RS09655 (WMZ02_09655) sbcB 2049865..2051286 (+) 1422 WP_346337933.1 exodeoxyribonuclease I Machinery gene
  WMZ02_RS09660 (WMZ02_09660) - 2051342..2051716 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  WMZ02_RS09665 (WMZ02_09665) - 2051718..2052395 (+) 678 WP_025522457.1 LrgB family protein -
  WMZ02_RS09670 (WMZ02_09670) cdd 2052760..2053647 (+) 888 WP_025505218.1 cytidine deaminase -
  WMZ02_RS09675 (WMZ02_09675) purT 2053795..2054970 (+) 1176 WP_023584297.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  WMZ02_RS09680 (WMZ02_09680) - 2055072..2055722 (-) 651 WP_021486580.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54589.91 Da        Isoelectric Point: 5.0432

>NTDB_id=973168 WMZ02_RS09655 WP_346337933.1 2049865..2051286(+) (sbcB) [Vibrio parahaemolyticus strain NJIFDCVp7]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLHDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=973168 WMZ02_RS09655 WP_346337933.1 2049865..2051286(+) (sbcB) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCTAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTCACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment