Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AABD50_RS06235 Genome accession   NZ_CP150862
Coordinates   1358702..1360123 (-) Length   473 a.a.
NCBI ID   WP_025522458.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-201911     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353702..1365123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD50_RS06210 (AABD50_06210) - 1354266..1354916 (+) 651 WP_025628913.1 thiopurine S-methyltransferase -
  AABD50_RS06215 (AABD50_06215) purT 1355018..1356193 (-) 1176 WP_005495504.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AABD50_RS06220 (AABD50_06220) cdd 1356341..1357228 (-) 888 WP_025505218.1 cytidine deaminase -
  AABD50_RS06225 (AABD50_06225) - 1357593..1358270 (-) 678 WP_025522457.1 LrgB family protein -
  AABD50_RS06230 (AABD50_06230) - 1358272..1358646 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  AABD50_RS06235 (AABD50_06235) sbcB 1358702..1360123 (-) 1422 WP_025522458.1 exodeoxyribonuclease I Machinery gene
  AABD50_RS06240 (AABD50_06240) - 1360279..1361652 (-) 1374 WP_005486634.1 L-cystine transporter -
  AABD50_RS06245 (AABD50_06245) - 1361845..1362540 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  AABD50_RS06250 (AABD50_06250) cobT 1363223..1364266 (+) 1044 WP_025627178.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AABD50_RS06255 (AABD50_06255) - 1364311..1365063 (+) 753 WP_031858852.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54704.01 Da        Isoelectric Point: 4.9278

>NTDB_id=973140 AABD50_RS06235 WP_025522458.1 1358702..1360123(-) (sbcB) [Vibrio parahaemolyticus strain vp-201911]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLDDLLPVPVKLVHLNKCPILAPAKTLTTENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=973140 AABD50_RS06235 WP_025522458.1 1358702..1360123(-) (sbcB) [Vibrio parahaemolyticus strain vp-201911]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGACGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGACGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment