Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABD50_RS02825 Genome accession   NZ_CP150862
Coordinates   577716..578234 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain vp-201911     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 572716..583234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD50_RS02815 (AABD50_02815) gshA 575451..577016 (+) 1566 WP_025518038.1 glutamate--cysteine ligase -
  AABD50_RS02820 (AABD50_02820) - 577044..577649 (+) 606 WP_023585955.1 hypothetical protein -
  AABD50_RS02825 (AABD50_02825) luxS 577716..578234 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  AABD50_RS02830 (AABD50_02830) - 578296..579576 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  AABD50_RS02835 (AABD50_02835) - 579702..580496 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  AABD50_RS02840 (AABD50_02840) ffh 580709..582100 (+) 1392 WP_045586564.1 signal recognition particle protein -
  AABD50_RS02845 (AABD50_02845) rpsP 582310..582558 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  AABD50_RS02850 (AABD50_02850) rimM 582587..583135 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=973127 AABD50_RS02825 WP_005462534.1 577716..578234(+) (luxS) [Vibrio parahaemolyticus strain vp-201911]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=973127 AABD50_RS02825 WP_005462534.1 577716..578234(+) (luxS) [Vibrio parahaemolyticus strain vp-201911]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment