Detailed information NTG0973124

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABD50_RS02695
• Genome accession: NZ_CP150862
• Coordinates: 555131..556120 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain vp-201911
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 550131..561120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD50_RS02660 (AABD50_02660)	ftsB	550139..550420 (+)	282	WP_005455577.1	cell division protein FtsB	-
AABD50_RS02665 (AABD50_02665)	ispD	550422..551126 (+)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AABD50_RS02670 (AABD50_02670)	ispF	551144..551620 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABD50_RS02675 (AABD50_02675)	truD	551667..552710 (+)	1044	WP_169608834.1	tRNA pseudouridine(13) synthase TruD	-
AABD50_RS02680 (AABD50_02680)	surE	552710..553486 (+)	777	WP_169608831.1	5'/3'-nucleotidase SurE	-
AABD50_RS02685 (AABD50_02685)	-	553486..554112 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AABD50_RS02690 (AABD50_02690)	-	554127..555050 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
AABD50_RS02695 (AABD50_02695)	rpoS	555131..556120 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
AABD50_RS02700 (AABD50_02700)	mutS	556199..558760 (-)	2562	WP_025610927.1	DNA mismatch repair protein MutS	-
AABD50_RS02705 (AABD50_02705)	pncC	558845..559327 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
AABD50_RS02710 (AABD50_02710)	recA	559528..560571 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=973124 AABD50_RS02695 WP_005478537.1 555131..556120(+) (rpoS) [Vibrio parahaemolyticus strain vp-201911]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=973124 AABD50_RS02695 WP_005478537.1 555131..556120(+) (rpoS) [Vibrio parahaemolyticus strain vp-201911]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851