Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   AABD48_RS17670 Genome accession   NZ_CP150858
Coordinates   278273..278383 (-) Length   36 a.a.
NCBI ID   WP_269467447.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-201806     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273273..283383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD48_RS17665 (AABD48_17670) - 276263..277828 (-) 1566 WP_050505239.1 EAL domain-containing protein -
  AABD48_RS17670 (AABD48_17675) pilJ 278273..278383 (-) 111 WP_269467447.1 methyl-accepting chemotaxis protein Machinery gene
  AABD48_RS17675 (AABD48_17680) - 278707..279546 (-) 840 WP_085576863.1 hypothetical protein -
  AABD48_RS17680 (AABD48_17685) tnpA 279789..280211 (-) 423 WP_031855796.1 IS200/IS605 family transposase -
  AABD48_RS17685 (AABD48_17690) - 280393..281547 (-) 1155 WP_085576882.1 methyl-accepting chemotaxis protein -
  AABD48_RS17690 (AABD48_17695) - 281603..282850 (-) 1248 WP_031855795.1 outer membrane protein transport protein -
  AABD48_RS17695 (AABD48_17700) - 282906..283241 (-) 336 WP_031855794.1 hypothetical protein -

Sequence

Protein


Download         Length: 36 a.a.        Molecular weight: 3978.59 Da        Isoelectric Point: 4.2645

>NTDB_id=973107 AABD48_RS17670 WP_269467447.1 278273..278383(-) (pilJ) [Vibrio parahaemolyticus strain vp-201806]
MRIYSDEISTVLDMIESISEQTNLLALNAAIKAPRA

Nucleotide


Download         Length: 111 bp        

>NTDB_id=973107 AABD48_RS17670 WP_269467447.1 278273..278383(-) (pilJ) [Vibrio parahaemolyticus strain vp-201806]
TTGAGGATTTATTCGGATGAAATAAGTACTGTTTTAGATATGATTGAATCGATATCTGAACAGACGAATTTGTTAGCGTT
AAATGCAGCAATTAAAGCTCCAAGAGCGTGA

Domains

Predicted by InterProScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(5-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

56.25

88.889

0.5

Multiple sequence alignment