Detailed information NTG0973099

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABD48_RS15045
• Genome accession: NZ_CP150857
• Coordinates: 3223299..3224306 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain vp-201806
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3218299..3229306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD48_RS15025 (AABD48_15030)	rplC	3218833..3219462 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
AABD48_RS15030 (AABD48_15035)	rpsJ	3219477..3219788 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
AABD48_RS15035 (AABD48_15040)	rpmE	3220246..3220467 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
AABD48_RS15040 (AABD48_15045)	priA	3220762..3222966 (+)	2205	WP_029805229.1	primosomal protein N'	-
AABD48_RS15045 (AABD48_15050)	cytR	3223299..3224306 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
AABD48_RS15050 (AABD48_15055)	ftsN	3224483..3225028 (+)	546	WP_005489623.1	cell division protein FtsN	-
AABD48_RS15055 (AABD48_15060)	hslV	3225192..3225743 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
AABD48_RS15060 (AABD48_15065)	hslU	3225767..3227098 (+)	1332	WP_031856197.1	HslU--HslV peptidase ATPase subunit	-
AABD48_RS15065 (AABD48_15070)	-	3227523..3227747 (-)	225	WP_005489715.1	hypothetical protein	-
AABD48_RS15070 (AABD48_15075)	-	3227907..3228107 (-)	201	WP_031856196.1	AlpA family transcriptional regulator	-
AABD48_RS15075 (AABD48_15080)	radC	3228224..3228697 (+)	474	WP_005489555.1	DNA repair protein RadC	-
AABD48_RS15080 (AABD48_15085)	-	3228694..3229125 (+)	432	WP_005489473.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=973099 AABD48_RS15045 WP_005481416.1 3223299..3224306(+) (cytR) [Vibrio parahaemolyticus strain vp-201806]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=973099 AABD48_RS15045 WP_005481416.1 3223299..3224306(+) (cytR) [Vibrio parahaemolyticus strain vp-201806]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGACCAGATAC
AGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTTCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904