Detailed information NTG0973076

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABD48_RS02830
• Genome accession: NZ_CP150857
• Coordinates: 581092..582081 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain vp-201806
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 576092..587081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD48_RS02795 (AABD48_02795)	ftsB	576100..576381 (+)	282	WP_005455577.1	cell division protein FtsB	-
AABD48_RS02800 (AABD48_02800)	ispD	576383..577087 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AABD48_RS02805 (AABD48_02805)	ispF	577105..577581 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABD48_RS02810 (AABD48_02810)	truD	577628..578671 (+)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
AABD48_RS02815 (AABD48_02815)	surE	578671..579447 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
AABD48_RS02820 (AABD48_02820)	-	579447..580073 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AABD48_RS02825 (AABD48_02825)	-	580088..581011 (+)	924	WP_021486791.1	peptidoglycan DD-metalloendopeptidase family protein	-
AABD48_RS02830 (AABD48_02830)	rpoS	581092..582081 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
AABD48_RS02835 (AABD48_02835)	mutS	582161..584722 (-)	2562	WP_085577166.1	DNA mismatch repair protein MutS	-
AABD48_RS02840 (AABD48_02840)	pncC	584807..585289 (+)	483	WP_005455551.1	nicotinamide-nucleotide amidase	-
AABD48_RS02845 (AABD48_02845)	recA	585490..586533 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=973076 AABD48_RS02830 WP_005478537.1 581092..582081(+) (rpoS) [Vibrio parahaemolyticus strain vp-201806]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=973076 AABD48_RS02830 WP_005478537.1 581092..582081(+) (rpoS) [Vibrio parahaemolyticus strain vp-201806]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCTGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851