Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACL6EQ_RS20760 Genome accession   NZ_CP178716
Coordinates   4017316..4017546 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SY1483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4012316..4022546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS20730 (ACL6EQ_20730) ridA 4012480..4012857 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ACL6EQ_RS20735 (ACL6EQ_20735) spoVG 4013052..4013345 (+) 294 WP_003218346.1 septation regulator SpoVG -
  ACL6EQ_RS20740 (ACL6EQ_20740) glmU 4013538..4014908 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACL6EQ_RS20745 (ACL6EQ_20745) prsS 4014931..4015884 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ACL6EQ_RS20750 (ACL6EQ_20750) rplYB 4015969..4016583 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  ACL6EQ_RS20755 (ACL6EQ_20755) pth 4016690..4017256 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ACL6EQ_RS20760 (ACL6EQ_20760) subA/fin 4017316..4017546 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ACL6EQ_RS20765 (ACL6EQ_20765) mfd 4017616..4021149 (+) 3534 WP_041850256.1 transcription-repair coupling factor -
  ACL6EQ_RS20770 (ACL6EQ_20770) spoVT 4021285..4021821 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=972921 ACL6EQ_RS20760 WP_003243417.1 4017316..4017546(+) (subA/fin) [Bacillus subtilis strain SY1483]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=972921 ACL6EQ_RS20760 WP_003243417.1 4017316..4017546(+) (subA/fin) [Bacillus subtilis strain SY1483]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1