Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ACL6EQ_RS19665 Genome accession   NZ_CP178716
Coordinates   3816951..3817640 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain SY1483     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3811951..3822640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS19645 (ACL6EQ_19645) yxeA 3812856..3813203 (-) 348 WP_413359424.1 YxeA family protein -
  ACL6EQ_RS19650 (ACL6EQ_19650) yxdM 3813217..3815085 (-) 1869 WP_413359427.1 ABC transporter permease YxdM -
  ACL6EQ_RS19655 (ACL6EQ_19655) yxdL 3815060..3815833 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  ACL6EQ_RS19660 (ACL6EQ_19660) yxdK 3815977..3816954 (-) 978 WP_086344513.1 two-component system sensor histidine kinase YxdK -
  ACL6EQ_RS19665 (ACL6EQ_19665) braR 3816951..3817640 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  ACL6EQ_RS19670 (ACL6EQ_19670) iolJ 3817748..3818620 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  ACL6EQ_RS19675 (ACL6EQ_19675) iolI 3818641..3819477 (-) 837 WP_015715014.1 2-keto-myo-inositol isomerase -
  ACL6EQ_RS19680 (ACL6EQ_19680) iolH 3819563..3820432 (-) 870 WP_086344514.1 sugar phosphate isomerase/epimerase family protein -
  ACL6EQ_RS19685 (ACL6EQ_19685) iolG 3820452..3821486 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=972910 ACL6EQ_RS19665 WP_003243527.1 3816951..3817640(-) (braR) [Bacillus subtilis strain SY1483]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=972910 ACL6EQ_RS19665 WP_003243527.1 3816951..3817640(-) (braR) [Bacillus subtilis strain SY1483]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment