Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACL6EQ_RS18135 Genome accession   NZ_CP178716
Coordinates   3514228..3515361 (-) Length   377 a.a.
NCBI ID   WP_413359223.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3509228..3520361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS18095 (ACL6EQ_18095) ywnA 3509358..3509759 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ACL6EQ_RS18100 (ACL6EQ_18100) ureC 3509894..3511603 (-) 1710 WP_003243090.1 urease subunit alpha -
  ACL6EQ_RS18105 (ACL6EQ_18105) ureB 3511600..3511974 (-) 375 WP_015251023.1 urease subunit beta -
  ACL6EQ_RS18110 (ACL6EQ_18110) ureA 3511971..3512288 (-) 318 WP_003227724.1 urease subunit gamma -
  ACL6EQ_RS18115 (ACL6EQ_18115) - 3512482..3512639 (-) 158 Protein_3534 hypothetical protein -
  ACL6EQ_RS18120 (ACL6EQ_18120) - 3512906..3513118 (-) 213 Protein_3535 urea ABC transporter substrate-binding protein -
  ACL6EQ_RS18125 (ACL6EQ_18125) csbD 3513331..3513519 (-) 189 WP_003227718.1 stress response protein CsbD -
  ACL6EQ_RS18130 (ACL6EQ_18130) - 3513593..3514072 (-) 480 WP_003244390.1 hypothetical protein -
  ACL6EQ_RS18135 (ACL6EQ_18135) rapC 3514228..3515361 (-) 1134 WP_413359223.1 response regulator aspartate phosphatase RapB Regulator
  ACL6EQ_RS18140 (ACL6EQ_18140) moaA 3515553..3516578 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  ACL6EQ_RS18145 (ACL6EQ_18145) fdhD 3516594..3517382 (-) 789 WP_327825978.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACL6EQ_RS18150 (ACL6EQ_18150) - 3517628..3517789 (-) 162 WP_003227706.1 hypothetical protein -
  ACL6EQ_RS18155 (ACL6EQ_18155) ywmD 3517884..3518558 (-) 675 WP_003243553.1 vWA domain-containing protein -
  ACL6EQ_RS18160 (ACL6EQ_18160) - 3518611..3518751 (-) 141 WP_014478246.1 hypothetical protein -
  ACL6EQ_RS18165 (ACL6EQ_18165) ywmC 3518882..3519565 (-) 684 WP_338731330.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45022.20 Da        Isoelectric Point: 4.9071

>NTDB_id=972904 ACL6EQ_RS18135 WP_413359223.1 3514228..3515361(-) (rapC) [Bacillus subtilis strain SY1483]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKKEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSDAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=972904 ACL6EQ_RS18135 WP_413359223.1 3514228..3515361(-) (rapC) [Bacillus subtilis strain SY1483]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGAAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGATGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(153-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.895

100

0.432
  rapF Bacillus subtilis subsp. subtilis str. 168

42.933

99.469

0.427

Multiple sequence alignment