Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACL6EQ_RS14485 Genome accession   NZ_CP178716
Coordinates   2795884..2796594 (-) Length   236 a.a.
NCBI ID   WP_042977616.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2790884..2801594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS14465 (ACL6EQ_14465) cysK 2790936..2791871 (+) 936 WP_003229237.1 cysteine synthase A -
  ACL6EQ_RS14470 (ACL6EQ_14470) pepV 2791905..2793296 (-) 1392 WP_326382935.1 dipeptidase PepV -
  ACL6EQ_RS14475 (ACL6EQ_14475) pbuO 2793393..2794691 (+) 1299 WP_413358766.1 hypoxanthine/guanine permease PbuO -
  ACL6EQ_RS14480 (ACL6EQ_14480) ythQ 2794730..2795887 (-) 1158 WP_413358769.1 ABC transporter permease -
  ACL6EQ_RS14485 (ACL6EQ_14485) pptA 2795884..2796594 (-) 711 WP_042977616.1 ABC transporter ATP-binding protein Regulator
  ACL6EQ_RS14490 (ACL6EQ_14490) ytzE 2796885..2797106 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACL6EQ_RS14495 (ACL6EQ_14495) rsuA 2797228..2797947 (-) 720 WP_017695479.1 pseudouridine synthase -
  ACL6EQ_RS14500 (ACL6EQ_14500) murJ 2798016..2799650 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  ACL6EQ_RS14505 (ACL6EQ_14505) ytfP 2799853..2801115 (+) 1263 WP_134981923.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26495.53 Da        Isoelectric Point: 5.1632

>NTDB_id=972885 ACL6EQ_RS14485 WP_042977616.1 2795884..2796594(-) (pptA) [Bacillus subtilis strain SY1483]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDQVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=972885 ACL6EQ_RS14485 WP_042977616.1 2795884..2796594(-) (pptA) [Bacillus subtilis strain SY1483]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCTATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCAGGTTAAACATGAGCTGCCTGTCACCTTTTCAAAAGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTGATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432