Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KDR_RS09385 Genome accession   NZ_CP150840
Coordinates   1888690..1889910 (+) Length   406 a.a.
NCBI ID   WP_010888498.1    Uniprot ID   Q9RTA2
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1883690..1894910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDR_RS09360 - 1885181..1885600 (-) 420 WP_010888492.1 organic hydroperoxide resistance protein -
  KDR_RS09365 - 1885706..1886458 (+) 753 WP_010888493.1 TSUP family transporter -
  KDR_RS09370 - 1886496..1887278 (-) 783 WP_027479797.1 DUF4388 domain-containing protein -
  KDR_RS09375 scpB 1887382..1887930 (-) 549 WP_010888496.1 SMC-Scp complex subunit ScpB -
  KDR_RS09380 - 1887927..1888619 (-) 693 WP_010888497.1 L-threonylcarbamoyladenylate synthase -
  KDR_RS09385 pilC 1888690..1889910 (+) 1221 WP_010888498.1 type II secretion system F family protein Machinery gene
  KDR_RS09390 - 1889962..1890315 (-) 354 WP_010888499.1 DUF423 domain-containing protein -
  KDR_RS09395 mraZ 1890594..1891022 (+) 429 WP_010888500.1 division/cell wall cluster transcriptional repressor MraZ -
  KDR_RS09400 rsmH 1891019..1891957 (+) 939 WP_010888501.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  KDR_RS09405 - 1891958..1892320 (+) 363 WP_010888502.1 hypothetical protein -
  KDR_RS09410 - 1892311..1893657 (+) 1347 WP_027479798.1 penicillin-binding protein 2 -
  KDR_RS09415 - 1893664..1894668 (-) 1005 WP_010888504.1 4Fe-4S binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44323.84 Da        Isoelectric Point: 7.3174

>NTDB_id=972873 KDR_RS09385 WP_010888498.1 1888690..1889910(+) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MPVYEYRARDRGGQTLKSQMEADSEAQVRDALRARNLMILEIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFEAVIKKVRGEVESGQPLSEALQQHPKIFGRLFINLVRAGETSGTLDTVLERIADFQEKQ
LALQGKIKSALTYPTVVLVFALGITYFLLTTVVPQFAGILTQLNAPLPFITRMLMAVSNFLQHSGLLLLAIIAVIVLAYR
WYYRTPQGRHAIDDFKLRLPVFGNLIQKSAISSFARTFGLLVSSGVNIIESLEITKGTADNAIVEETIENAKNVVISGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=972873 KDR_RS09385 WP_010888498.1 1888690..1889910(+) (pilC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGCCGGTCTACGAATATCGCGCCCGGGACCGGGGGGGTCAGACCCTCAAATCCCAGATGGAGGCCGACTCCGAAGCCCA
GGTCCGCGACGCGCTGCGGGCCCGCAACCTGATGATTCTGGAAATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCAGGTCTCACCGACCGCCCGCCGGGACTCAAGCAGGTGGCGGTCTTCAGCAAGCAGCTCGCTACCCTGATCAAT
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGCCAGCTCGACAACAAGACCTTCGAGGCCGTGATCAAAAA
GGTGCGCGGCGAGGTCGAGTCGGGCCAGCCGCTCAGCGAGGCACTGCAACAGCACCCCAAGATCTTCGGGCGGCTGTTCA
TCAACCTCGTCCGCGCCGGAGAAACGAGCGGCACGCTCGACACGGTGCTCGAGCGTATCGCCGACTTTCAGGAAAAGCAG
CTCGCGTTGCAGGGCAAGATCAAGAGCGCGCTGACCTACCCCACGGTGGTGCTGGTCTTCGCCCTAGGGATCACCTACTT
CCTACTGACCACCGTGGTGCCGCAGTTCGCCGGCATCCTGACGCAGCTCAATGCGCCGCTCCCTTTCATCACGCGCATGC
TGATGGCGGTCTCCAACTTCTTGCAGCACTCGGGCCTGCTGCTGCTCGCCATCATCGCTGTGATCGTGCTCGCTTACCGC
TGGTACTACCGCACGCCCCAGGGCCGTCACGCCATTGACGACTTTAAGTTGCGCTTGCCGGTGTTCGGCAACCTGATCCA
GAAAAGCGCCATCAGTTCGTTTGCCCGCACCTTTGGCCTGCTCGTCAGCAGCGGGGTCAACATTATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAATGCGATCGTCGAAGAAACCATCGAGAACGCTAAGAACGTGGTGATCTCGGGGGACCAG
ATGAGTTCAAGTCTGGCGACCAGCAAAGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGCGAGGAAACCGGGTC
GCTCGACAACATGCTCAACAAGGTTGCCGACTTCTATGACCGCGAGGTGGACGAGGCCGTCGAGAGTCTGACCGCCGCCA
TCGAACCGATGATGATCGTGTTTCTGGGCGGCATCGTCGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGAACGCTCAGCCAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RTA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

60.099

100

0.601

Multiple sequence alignment