Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   WN777_RS21915 Genome accession   NZ_CP150839
Coordinates   4254222..4256561 (-) Length   779 a.a.
NCBI ID   WP_242294135.1    Uniprot ID   -
Organism   Bacillus pacificus strain SG15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4249222..4261561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS21885 (WN777_21870) - 4249541..4249717 (-) 177 WP_001242605.1 hypothetical protein -
  WN777_RS21890 (WN777_21875) - 4249844..4249984 (-) 141 WP_167496960.1 hypothetical protein -
  WN777_RS21895 (WN777_21880) - 4249984..4250679 (-) 696 WP_139866550.1 alpha/beta fold hydrolase -
  WN777_RS21900 (WN777_21885) - 4250810..4251250 (-) 441 WP_001266956.1 D-tyrosyl-tRNA(Tyr) deacylase -
  WN777_RS21905 (WN777_21890) relA 4251268..4253451 (-) 2184 WP_001262814.1 GTP diphosphokinase -
  WN777_RS21910 (WN777_21895) - 4253662..4254174 (-) 513 WP_000346214.1 adenine phosphoribosyltransferase -
  WN777_RS21915 (WN777_21900) recJ 4254222..4256561 (-) 2340 WP_242294135.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  WN777_RS21920 (WN777_21905) - 4256663..4257556 (-) 894 WP_139867098.1 cation diffusion facilitator family transporter -
  WN777_RS21925 (WN777_21910) secDF 4257862..4260126 (-) 2265 WP_242294136.1 protein translocase subunit SecDF -
  WN777_RS21930 (WN777_21915) - 4260396..4260680 (-) 285 WP_000886980.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88039.55 Da        Isoelectric Point: 4.8975

>NTDB_id=972845 WN777_RS21915 WP_242294135.1 4254222..4256561(-) (recJ) [Bacillus pacificus strain SG15]
MLQPKTRWKEKEYNSERVSELASKLQLSPLVVSLFLGRGIDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYVALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRIPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVETNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKGKITMVYFSEEVLNKFSLEDYKEHMMHASEVTELDDQYIVFLDLPKGTDELRE
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKSPFSLRQYGAQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEKKQKRDLIESSTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=972845 WN777_RS21915 WP_242294135.1 4254222..4256561(-) (recJ) [Bacillus pacificus strain SG15]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATAGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGAATAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCGTTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACAACTGTTTTATATGTTGCCTTACAAGAATT
AGGTGCAGACGTAGAATTTTATATCCCAAACCGTTTTACAGAAGGTTATGGACCGAACGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTTTCACTCATTATTACTGTCGATACTGGTATTGCAGCTGTACATGAAGCGAAGGTAGCAAAGGAACTT
GGGATAGATCTAATTATTACAGATCACCATGAGCCACCACCAGAATTGCCAGAAGCACTTGCGATTATTCATCCGAAATT
AGATGGCGGTGTGTATCCGTTTCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCACTACTGGGCCGTA
TACCAGAACATTTATTAGAAATTGCAGTGATTGGTACGGTAGCTGATTTAGTATCACTTCACGGTGAGAATAGATTGTTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATTGGCTTCTCAATCGCACCTCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGAGGATCCCGAAGAAGCGAAAGAGCTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATTGCTGAAGTGGAAACGAATTTTCCGCCTGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACTGCAAAAGGTTCAGCGCGTAGTATTGCAGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGTTTAAATGAACAGGCAGATACAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTCGATGCCTTTTGCAAAGTGGAGGACGTAACACTTGCAGCGATTGAAGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCAAAGCCACGTATTGCGGTGAAAGATGCGGAGTTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCTCATTT
AAAGATGTCTCTTCGTGATGGACAAGCAACATTGGATACAATTGGATTCGGTTTTGGCGCATATGCGAAAGAAATTTCTC
CAGTTGCAAAAGTATCTGTAATAGGAGAAGCGTCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAAGCATGGCAATTATTCGATTGGCGTAGTATGCGTAACGTAGAAGCAAATTTAGCAGAACTTCCGAA
AGGGAAAATCACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTGACCGAGTTAGATGATCAATACATCGTATTCCTTGATTTACCAAAAGGGACAGATGAATTAAGAGAG
CTATTTAAAGTAGGATTCCCGTCGCGAATTTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACATTTTAAATGGTACTATTCGTTCTTGAGCCAAAAATCACCATTTTCTTTAAGACAATATGGAGCGCAACTAT
GTCAGCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGAAAAAAAACAAAAGCGTGATTTAATTGAATCGAGCACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.842

99.358

0.525

Multiple sequence alignment