Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WN777_RS06555 Genome accession   NZ_CP150839
Coordinates   1281251..1281574 (-) Length   107 a.a.
NCBI ID   WP_139869697.1    Uniprot ID   -
Organism   Bacillus pacificus strain SG15     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1276251..1286574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS06530 (WN777_06520) - 1276439..1277725 (+) 1287 WP_087994540.1 D-alanyl-D-alanine carboxypeptidase family protein -
  WN777_RS06535 (WN777_06525) sipW 1277917..1278486 (+) 570 WP_000767811.1 signal peptidase I SipW -
  WN777_RS06540 (WN777_06530) - 1278547..1279137 (+) 591 WP_098556540.1 CalY family protein -
  WN777_RS06545 (WN777_06535) - 1279296..1280153 (+) 858 WP_406846490.1 DUF4047 domain-containing protein -
  WN777_RS06550 (WN777_06540) calY 1280583..1281176 (+) 594 WP_070805540.1 biofilm matrix protein CalY -
  WN777_RS06555 (WN777_06545) sinR 1281251..1281574 (-) 324 WP_139869697.1 helix-turn-helix domain-containing protein Regulator
  WN777_RS06560 (WN777_06550) - 1281654..1281788 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  WN777_RS06565 (WN777_06555) inhA1 1282130..1284520 (+) 2391 WP_139869696.1 M6 family metalloprotease immune inhibitor InhA1 -
  WN777_RS06570 (WN777_06560) - 1284692..1286059 (+) 1368 WP_242294796.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12350.18 Da        Isoelectric Point: 8.5404

>NTDB_id=972826 WN777_RS06555 WP_139869697.1 1281251..1281574(-) (sinR) [Bacillus pacificus strain SG15]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENQLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=972826 WN777_RS06555 WP_139869697.1 1281251..1281574(-) (sinR) [Bacillus pacificus strain SG15]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCAATTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCTGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701

Multiple sequence alignment