Detailed information NTG0972820

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: WN777_RS05965
• Genome accession: NZ_CP150839
• Coordinates: 1164440..1167040 (+)
• Length: 866 a.a.
• NCBI ID: WP_242294629.1
• Uniprot ID: -
• Organism: Bacillus pacificus strain SG15
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1159440..1172040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WN777_RS05930 (WN777_05920)	prsA	1160197..1161054 (-)	858	WP_242294630.1	peptidylprolyl isomerase PrsA	-
WN777_RS05935 (WN777_05925)	-	1161185..1161316 (-)	132	WP_001120845.1	DUF3941 domain-containing protein	-
WN777_RS05940 (WN777_05930)	-	1161417..1162274 (+)	858	WP_000364453.1	YitT family protein	-
WN777_RS05945 (WN777_05935)	-	1162300..1162497 (-)	198	WP_139868698.1	DUF3813 domain-containing protein	-
WN777_RS05950 (WN777_05940)	-	1162498..1162638 (-)	141	WP_000516816.1	hypothetical protein	-
WN777_RS05955 (WN777_05945)	-	1162744..1163553 (-)	810	WP_001041235.1	Cof-type HAD-IIB family hydrolase	-
WN777_RS05960 (WN777_05950)	-	1164048..1164227 (+)	180	WP_139868696.1	YjzC family protein	-
WN777_RS05965 (WN777_05955)	clpC	1164440..1167040 (+)	2601	WP_242294629.1	ATP-dependent chaperone ClpB	Regulator
WN777_RS05970 (WN777_05960)	-	1167079..1167261 (-)	183	WP_001211116.1	YjzD family protein	-
WN777_RS05975 (WN777_05965)	-	1167418..1168152 (+)	735	WP_139868692.1	alpha/beta hydrolase	-
WN777_RS05980 (WN777_05970)	-	1168182..1169054 (+)	873	WP_242294628.1	NAD(P)-dependent oxidoreductase	-
WN777_RS05985 (WN777_05975)	comZ	1169108..1169284 (+)	177	WP_048527481.1	ComZ family protein	Regulator
WN777_RS05990 (WN777_05980)	fabH	1169516..1170448 (+)	933	WP_001100536.1	beta-ketoacyl-ACP synthase III	-
WN777_RS05995 (WN777_05985)	fabF	1170480..1171718 (+)	1239	WP_000412651.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97463.51 Da
• Isoelectric Point: 5.1949

>NTDB_id=972820 WN777_RS05965 WP_242294629.1 1164440..1167040(+) (clpC) [Bacillus pacificus strain SG15]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAENLIKKKPSVTGSGAE
AGKLYITGALQQLLVRAGKEAEKLQDDYISVEHVLLAFTEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLGEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTIIDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=972820 WN777_RS05965 WP_242294629.1 1164440..1167040(+) (clpC) [Bacillus pacificus strain SG15]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCTCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTACGTATTTTTCAAAAAATGA
ACGTCGATATAGAAGCATTAAAACAAGGCGCCGAAAATTTAATTAAGAAAAAGCCTTCCGTAACAGGAAGCGGTGCAGAA
GCAGGTAAATTATATATAACAGGTGCCTTGCAACAATTACTTGTAAGAGCAGGAAAAGAAGCAGAAAAATTGCAAGATGA
TTACATTTCAGTTGAACATGTATTACTTGCTTTTACTGAAGAAAAAGGCGATATAAACCAATTATTTACAAGATTTCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGTCGTGATTTAGTGGCGGAAGTAAGAGCGGGGAAAATTGACCCTGTTATCGGCCGCGA
TAGTGAAATTCGCCGCGTAATCCGCATTCTTTCACGTAAAACGAAAAACAACCCAGTTTTAATTGGTGAACCAGGTGTTG
GTAAAACAGCAATTGTTGAGGGGTTAGCACAGCGTATTGTGAAGAAGGATGTACCTGAAGGCTTAAAAGATAGAACAATC
TTTGCATTAGATATGAGTGCGCTTGTAGCTGGAGCAAAATTCCGTGGTGAATTTGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGACGCATTTTATTATTCATTGATGAACTTCATACAATTGTCGGTGCTGGTAAAACAGAAG
GCGCAATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTACACTGTATCGGGGCGACGACGTTAGAT
GAATATCGTAAATATATTGAGAAAGATCCAGCACTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCCGTTTTATCAGATCGATATATTTCGGATCGTTTCTTACCGGATAAAGCAATTGATCTTGTTGACGAAGCG
TGCGCAACAATTCGTACAGAAATCGATTCTATGCCGACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAAAGGACTTTGGTAGCCAAGAACGTCTAAAAACGTTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGGAATTACGATCTAAATAAAGCAGCGGAACTTCGCCACGG
AAAAATTCCTGCAATTGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCTGATATTGTTTCACGTTGGACTGGTATTCCTGTTGCAAAACTCGTTGAAGGT
GAACGCGAGAAATTACTACGTTTAGAGCAAATTTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTATC
AGACGCAGTTCTTCGTGCACGCGCAGGTATTAAAGACCCGAACCGTCCGATTGGTTCCTTTATCTTCTTAGGACCAACTG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCATTATTCGATAGTGAAGAACAAATGATTCGTATTGATATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGATATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCCGTTATTTTATTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGACGGTCGCATTACAGATTCGCAAGGACGTACAGTAGACTTTAAAAACACGGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGGAGAAGATGGCTCCATTAAAGAAGAATCAAGAGA
ACTTGTAATGGGACAATTAAGAGGTCATTTCCGACCAGAGTTTTTAAACCGTGTCGACGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAATTACAAGGTCGTTTAGCTGACCGTCACATTACA
GTAGAATTAACAGACGCAGCGAAAGAGTTTGTTGTCGAAGCTGGCTTCGATCCGATGTACGGAGCCCGTCCATTAAAACG
ATACGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGTACGATTATTGACAATAGTCATGTAGTGG
TTGATGTAGAAAATAACGAGTTAGTTGTTCATGTGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• AAA lid domain (AAA_lid_9) (345-447)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.771	100	0.483
clpC	Lactococcus lactis subsp. cremoris KW2	48.058	80.254	0.386