Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WNC56_RS19700 Genome accession   NZ_CP150833
Coordinates   3833071..3833613 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus safensis strain DMB13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3828071..3838613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS19675 (WNC56_19655) - 3828344..3828952 (-) 609 WP_034622294.1 alpha/beta hydrolase -
  WNC56_RS19680 (WNC56_19660) - 3828949..3829920 (-) 972 WP_225315561.1 ring-cleaving dioxygenase -
  WNC56_RS19685 (WNC56_19665) opuFB 3830112..3831629 (-) 1518 WP_151040656.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  WNC56_RS19690 (WNC56_19670) - 3831622..3832587 (-) 966 WP_073208210.1 ABC transporter ATP-binding protein -
  WNC56_RS19695 (WNC56_19675) rpsR 3832791..3833030 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  WNC56_RS19700 (WNC56_19680) ssbA 3833071..3833613 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  WNC56_RS19705 (WNC56_19685) rpsF 3833650..3833937 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  WNC56_RS19710 (WNC56_19690) ychF 3834046..3835146 (-) 1101 WP_024424059.1 redox-regulated ATPase YchF -
  WNC56_RS19715 (WNC56_19695) - 3835363..3835569 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  WNC56_RS19720 (WNC56_19700) - 3835865..3837184 (+) 1320 WP_122632135.1 hydrolase -
  WNC56_RS19725 (WNC56_19705) - 3837200..3837610 (+) 411 WP_122632136.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=972808 WNC56_RS19700 WP_007497456.1 3833071..3833613(-) (ssbA) [Bacillus safensis strain DMB13]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=972808 WNC56_RS19700 WP_007497456.1 3833071..3833613(-) (ssbA) [Bacillus safensis strain DMB13]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTTAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361

Multiple sequence alignment