Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WNC56_RS11730 Genome accession   NZ_CP150833
Coordinates   2309176..2309511 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain DMB13     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2304176..2314511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS11705 (WNC56_11695) gcvT 2304655..2305752 (-) 1098 WP_406845698.1 glycine cleavage system aminomethyltransferase GcvT -
  WNC56_RS11710 (WNC56_11700) - 2305779..2305979 (+) 201 WP_406845699.1 hypothetical protein -
  WNC56_RS11715 (WNC56_11705) - 2306314..2307984 (+) 1671 WP_406845700.1 DEAD/DEAH box helicase -
  WNC56_RS11720 (WNC56_11710) - 2307999..2308796 (+) 798 WP_024422968.1 YqhG family protein -
  WNC56_RS11725 (WNC56_11715) - 2308978..2309142 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  WNC56_RS11730 (WNC56_11720) sinR 2309176..2309511 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  WNC56_RS11735 (WNC56_11725) tasA 2309579..2310379 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  WNC56_RS11740 (WNC56_11730) sipW 2310434..2311006 (-) 573 WP_024422971.1 signal peptidase I SipW -
  WNC56_RS11745 (WNC56_11735) tapA 2311059..2311586 (-) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  WNC56_RS11750 (WNC56_11740) - 2311886..2312164 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  WNC56_RS11755 (WNC56_11745) - 2312199..2312393 (-) 195 WP_024422974.1 YqzE family protein -
  WNC56_RS11760 (WNC56_11750) - 2312453..2312836 (-) 384 WP_406845701.1 hypothetical protein -
  WNC56_RS11765 (WNC56_11755) comGF 2312833..2313360 (-) 528 WP_406845702.1 competence type IV pilus minor pilin ComGF -
  WNC56_RS11770 (WNC56_11760) comGE 2313272..2313586 (-) 315 WP_270127803.1 competence type IV pilus minor pilin ComGE -
  WNC56_RS11775 (WNC56_11765) comGD 2313570..2314016 (-) 447 WP_122631095.1 competence type IV pilus minor pilin ComGD -
  WNC56_RS11780 (WNC56_11770) comGC 2314009..2314302 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=972783 WNC56_RS11730 WP_024422969.1 2309176..2309511(+) (sinR) [Bacillus safensis strain DMB13]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=972783 WNC56_RS11730 WP_024422969.1 2309176..2309511(+) (sinR) [Bacillus safensis strain DMB13]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment