Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   WNC56_RS11530 Genome accession   NZ_CP150833
Coordinates   2274238..2275041 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain DMB13     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 2269238..2280041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS11510 (WNC56_11500) - 2271442..2271678 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  WNC56_RS11515 (WNC56_11505) - 2271715..2272452 (-) 738 WP_151040059.1 glycerophosphodiester phosphodiesterase -
  WNC56_RS11520 (WNC56_11510) - 2272681..2273781 (-) 1101 WP_034622321.1 Rap family tetratricopeptide repeat protein -
  WNC56_RS11525 (WNC56_11515) - 2273769..2273966 (-) 198 WP_024422934.1 hypothetical protein -
  WNC56_RS11530 (WNC56_11520) spo0A 2274238..2275041 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  WNC56_RS11535 (WNC56_11525) spoIVB 2275327..2276604 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  WNC56_RS11540 (WNC56_11530) recN 2276805..2278538 (-) 1734 WP_024428012.1 DNA repair protein RecN Machinery gene
  WNC56_RS11545 (WNC56_11535) ahrC 2278572..2279021 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -

Sequence


Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=972781 WNC56_RS11530 WP_024422935.1 2274238..2275041(-) (spo0A) [Bacillus safensis strain DMB13]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=972781 WNC56_RS11530 WP_024422935.1 2274238..2275041(-) (spo0A) [Bacillus safensis strain DMB13]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAGTGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTAGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATT
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCAATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884


Multiple sequence alignment