Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WNC56_RS08670 Genome accession   NZ_CP150833
Coordinates   1722590..1723633 (+) Length   347 a.a.
NCBI ID   WP_024424111.1    Uniprot ID   A0A5C0WLK5
Organism   Bacillus safensis strain DMB13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717590..1728633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS08645 (WNC56_08635) - 1718385..1718642 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  WNC56_RS08650 (WNC56_08640) - 1718774..1719565 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  WNC56_RS08655 (WNC56_08645) - 1719589..1720488 (+) 900 WP_024424113.1 helix-turn-helix domain-containing protein -
  WNC56_RS08660 (WNC56_08650) pgsA 1720563..1721144 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WNC56_RS08665 (WNC56_08655) cinA 1721161..1722411 (+) 1251 WP_024424112.1 competence/damage-inducible protein A Machinery gene
  WNC56_RS08670 (WNC56_08660) recA 1722590..1723633 (+) 1044 WP_024424111.1 recombinase RecA Machinery gene
  WNC56_RS08675 (WNC56_08665) - 1723777..1724952 (+) 1176 WP_024424110.1 serine hydrolase -
  WNC56_RS08680 (WNC56_08670) rny 1725186..1726748 (+) 1563 WP_003211958.1 ribonuclease Y -
  WNC56_RS08685 (WNC56_08675) - 1726839..1727633 (+) 795 WP_024424109.1 TIGR00282 family metallophosphoesterase -
  WNC56_RS08690 (WNC56_08680) spoVS 1727836..1728096 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37892.09 Da        Isoelectric Point: 4.7661

>NTDB_id=972778 WNC56_RS08670 WP_024424111.1 1722590..1723633(+) (recA) [Bacillus safensis strain DMB13]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGTVQQESEEALEQLELE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=972778 WNC56_RS08670 WP_024424111.1 1722590..1723633(+) (recA) [Bacillus safensis strain DMB13]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGCGGAT
ATCCCCGAGGCCGTATTATCGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCCCTTCATGCCATTGCTGAA
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCACTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAACATTGATGAACTGTTACTTTCTCAGCCGGATACAGGAGAGCAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGCG
GGGCAGTTGATATTGTTGTTATTGACTCTGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGATATGGGTGATTCA
CATGTTGGTCTTCAAGCACGTTTGATGTCCCAAGCACTTCGTAAACTATCAGGTGCTATCAATAAATCAAAAACAATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTGA
AGTTCTATTCGTCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTCAAAAACAAAGTAGCACCGCCATTCCGTATTGCCGAAGTAGACATTATGTACGGTGAAGGGATCTC
AAAAGAGGGAGAAATCATCGACCTTGGAAGCGAGCTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTAAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGTTTGGATAATAACGGAACAGTGCAACAGGAATCTGAAGAGGCGCTAGAACAATTAGAATTAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WLK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.997

95.965

0.931
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

94.236

0.703
  recA Streptococcus pneumoniae R6

67.544

98.559

0.666
  recA Streptococcus pneumoniae Rx1

67.544

98.559

0.666
  recA Streptococcus pneumoniae D39

67.544

98.559

0.666
  recA Streptococcus pneumoniae TIGR4

67.544

98.559

0.666
  recA Streptococcus mutans UA159

67.055

98.847

0.663
  recA Streptococcus mitis NCTC 12261

69.091

95.101

0.657
  recA Streptococcus mitis SK321

68.788

95.101

0.654
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

65.476

96.83

0.634
  recA Helicobacter pylori 26695

62.5

99.135

0.62
  recA Helicobacter pylori strain NCTC11637

62.5

99.135

0.62
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Neisseria gonorrhoeae strain FA1090

65.138

94.236

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.832

94.236

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.047

99.135

0.605
  recA Vibrio cholerae strain A1552

61.047

99.135

0.605
  recA Acinetobacter baumannii D1279779

62.13

97.406

0.605
  recA Glaesserella parasuis strain SC1401

59.884

99.135

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Acinetobacter baylyi ADP1

63.043

92.795

0.585
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.219

0.556

Multiple sequence alignment