Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WNC56_RS08160 Genome accession   NZ_CP150833
Coordinates   1615279..1616181 (+) Length   300 a.a.
NCBI ID   WP_406846158.1    Uniprot ID   -
Organism   Bacillus safensis strain DMB13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1610279..1621181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS08140 (WNC56_08130) - 1610942..1612681 (+) 1740 WP_406846156.1 glycosyltransferase -
  WNC56_RS08145 (WNC56_08135) - 1612678..1612953 (+) 276 WP_406846157.1 FlhB-like flagellar biosynthesis protein -
  WNC56_RS08150 (WNC56_08140) sucC 1613130..1614290 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  WNC56_RS08155 (WNC56_08145) sucD 1614313..1615215 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  WNC56_RS08160 (WNC56_08150) dprA 1615279..1616181 (+) 903 WP_406846158.1 DNA-processing protein DprA Machinery gene
  WNC56_RS08165 (WNC56_08155) topA 1616374..1618449 (+) 2076 WP_024424184.1 type I DNA topoisomerase -
  WNC56_RS08170 (WNC56_08160) trmFO 1618520..1619824 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WNC56_RS08175 (WNC56_08165) xerC 1619887..1620804 (+) 918 WP_087978882.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34027.32 Da        Isoelectric Point: 8.5961

>NTDB_id=972775 WNC56_RS08160 WP_406846158.1 1615279..1616181(+) (dprA) [Bacillus safensis strain DMB13]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLTQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRIPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTEPS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=972775 WNC56_RS08160 WP_406846158.1 1615279..1616181(+) (dprA) [Bacillus safensis strain DMB13]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCCGAACTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACATATCGTTCAAGCCTATTTAACGCAAAACATTCACATG
ATTCCCATTACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAATTCCCTCATCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATGTATACCCAAAAGAGCATGC
ACAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCGGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACCCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.514

96

0.523
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383

Multiple sequence alignment