Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACL60T_RS25850 Genome accession   NZ_CP178659
Coordinates   5063172..5064164 (-) Length   330 a.a.
NCBI ID   WP_000224462.1    Uniprot ID   -
Organism   Escherichia coli strain VTB96933v     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5058172..5069164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL60T_RS25840 (ACL60T_25805) yieP 5061064..5061756 (+) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -
  ACL60T_RS25845 (ACL60T_25810) mdtD 5061779..5063206 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACL60T_RS25850 (ACL60T_25815) cytR 5063172..5064164 (-) 993 WP_000224462.1 ribose operon transcriptional repressor RbsR Regulator
  ACL60T_RS25855 (ACL60T_25820) rbsK 5064168..5065097 (-) 930 WP_001361088.1 ribokinase -
  ACL60T_RS25860 (ACL60T_25825) rbsB 5065223..5066113 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACL60T_RS25865 (ACL60T_25830) rbsC 5066138..5067103 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACL60T_RS25870 (ACL60T_25835) rbsA 5067108..5068613 (-) 1506 WP_419876831.1 ribose ABC transporter ATP-binding protein RbsA -
  ACL60T_RS25875 (ACL60T_25840) rbsD 5068621..5069040 (-) 420 WP_269542065.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36637.99 Da        Isoelectric Point: 5.2141

>NTDB_id=972773 ACL60T_RS25850 WP_000224462.1 5063172..5064164(-) (cytR) [Escherichia coli strain VTB96933v]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLLHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=972773 ACL60T_RS25850 WP_000224462.1 5063172..5064164(-) (cytR) [Escherichia coli strain VTB96933v]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCTGAACTGGTGCGTGGC
GTTGAACGCAGTTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCACGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATTACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAAGTTCCGCAGGA
TATTGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTAGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment