Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   WNC56_RS07200 Genome accession   NZ_CP150833
Coordinates   1427200..1427772 (+) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus safensis strain DMB13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422200..1432772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS07170 (WNC56_07160) dapD 1422316..1423026 (+) 711 WP_008347987.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  WNC56_RS07175 (WNC56_07165) - 1423109..1424239 (+) 1131 WP_103132185.1 N-acetyldiaminopimelate deacetylase -
  WNC56_RS07180 (WNC56_07170) - 1424290..1424532 (+) 243 WP_024424725.1 YkuS family protein -
  WNC56_RS07185 (WNC56_07175) - 1424555..1425364 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  WNC56_RS07190 (WNC56_07180) ahpA 1425636..1426178 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  WNC56_RS07195 (WNC56_07185) - 1426261..1426719 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  WNC56_RS07200 (WNC56_07190) rok 1427200..1427772 (+) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  WNC56_RS07205 (WNC56_07195) - 1427821..1428738 (-) 918 WP_406846131.1 sigmaE regulated sporulation protein -
  WNC56_RS07210 (WNC56_07200) - 1428824..1429405 (+) 582 WP_122631275.1 molybdenum cofactor guanylyltransferase -
  WNC56_RS07215 (WNC56_07205) - 1429436..1430452 (+) 1017 WP_024424730.1 thiazole biosynthesis adenylyltransferase ThiF -
  WNC56_RS07220 (WNC56_07210) glp 1430462..1431739 (+) 1278 WP_406846132.1 gephyrin-like molybdotransferase Glp -
  WNC56_RS07225 (WNC56_07215) mobB 1431721..1432245 (+) 525 WP_406846133.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  WNC56_RS07230 (WNC56_07220) - 1432242..1432733 (+) 492 WP_406846134.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=972773 WNC56_RS07200 WP_024426871.1 1427200..1427772(+) (rok) [Bacillus safensis strain DMB13]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=972773 WNC56_RS07200 WP_024426871.1 1427200..1427772(+) (rok) [Bacillus safensis strain DMB13]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAGAGAAAGACGGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCTAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAACGTCATA
ATGCAGCGATTAAAAGCTCAGAACTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATCCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGTGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8

Multiple sequence alignment