Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AABD45_RS08225 Genome accession   NZ_CP150831
Coordinates   1777500..1778900 (-) Length   466 a.a.
NCBI ID   WP_017428872.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772500..1783900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS08190 (AABD45_08730) moaE 1773092..1773547 (-) 456 WP_103196684.1 molybdopterin synthase catalytic subunit MoaE -
  AABD45_RS08195 (AABD45_08735) moaD 1773549..1773794 (-) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  AABD45_RS08200 (AABD45_08740) moaC 1773791..1774270 (-) 480 WP_017428877.1 cyclic pyranopterin monophosphate synthase MoaC -
  AABD45_RS08205 (AABD45_08745) moaB 1774281..1774793 (-) 513 WP_406848892.1 molybdenum cofactor biosynthesis protein B -
  AABD45_RS08210 (AABD45_08750) moaA 1774872..1775861 (-) 990 WP_017428875.1 GTP 3',8-cyclase MoaA -
  AABD45_RS08215 (AABD45_08755) - 1776176..1777066 (+) 891 WP_406848893.1 YvcK family protein -
  AABD45_RS08220 (AABD45_08760) luxU 1777153..1777500 (-) 348 WP_017428873.1 quorum-sensing phosphorelay protein LuxU -
  AABD45_RS08225 (AABD45_08765) luxO 1777500..1778900 (-) 1401 WP_017428872.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AABD45_RS08230 (AABD45_08770) uvrB 1779208..1781238 (-) 2031 WP_406848894.1 excinuclease ABC subunit UvrB -
  AABD45_RS08240 (AABD45_08780) rsxA 1782120..1782698 (+) 579 WP_017428869.1 electron transport complex subunit RsxA -
  AABD45_RS08245 (AABD45_08785) rsxB 1782700..1783296 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52098.58 Da        Isoelectric Point: 6.2540

>NTDB_id=972725 AABD45_RS08225 WP_017428872.1 1777500..1778900(-) (luxO) [Vibrio vulnificus strain Per1]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDSDSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQSVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
AQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=972725 AABD45_RS08225 WP_017428872.1 1777500..1778900(-) (luxO) [Vibrio vulnificus strain Per1]
ATGCAACAAATAACGACAACGAAACAGCGTTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGACTTACGCCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGCCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCTGTTGAAGCAATGCGACACGGCTCGCAAGATTT
CTTGATCAAACCCTGTGAAGCTGACCGACTCAGGGTCACGGTGAACAACGCTATCCGCAAGGCGAGCAAGCTAAAAAATG
ACTCAGACAGCGCCGGAAGTCAGAATTATCAAGGCTTTATCGGCAGTAGTCAAAAAATGCAGCAGGTCTACCGAACCATT
GACTCGGCGGCCAGTAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCAGCCAGTCGACGCGGAGACAAGCCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGGCATGTCAAAGGTGCGTTTACTGGCGCAGCGACCGATCGCCAAGGGGCAGCAGAGCTCGCCGATGGAGGC
ACACTGTTCCTTGATGAGCTGTGTGAAATGGACCTAGATCTGCAAACAAAATTGCTGCGCTTTATCCAAACGGGTACTTT
CCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGCTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAAG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAGCGT
GGAGAGGATGTCATTGAAATCGCTTACTCGTTACTGGGTTATATGTCACATGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAATCTGTGATAGATAGATTTAATGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAACGTGG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGTTGCCGCCTCCTTTGAATCAGCCCTTTGAACGCAAAGAAAGT
GCGCAACCTGATCTGAGTGAGTTGATTTCCGTCAGAGATATTTGTCCATTGTGGTTGACCGAGAAACTGGCGATTGAACA
AGCGATTAAAGCGTGTGATGGTAACATTCCGAGAGCCGCAGGCTATCTTGATGTCAGCCCGTCTACGATTTATCGCAAGT
TACAGGCGTGGAATGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.323

95.708

0.826

Multiple sequence alignment