Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AABD45_RS06925 Genome accession   NZ_CP150831
Coordinates   1487256..1488677 (+) Length   473 a.a.
NCBI ID   WP_406849455.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1482256..1493677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS06900 (AABD45_07440) cobC 1482945..1483583 (-) 639 WP_103196745.1 alpha-ribazole phosphatase -
  AABD45_RS06905 (AABD45_07445) cobU 1483593..1484153 (-) 561 WP_165387672.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  AABD45_RS06910 (AABD45_07450) - 1484156..1484923 (-) 768 WP_130251359.1 adenosylcobinamide-GDP ribazoletransferase -
  AABD45_RS06915 (AABD45_07455) cobT 1484925..1485953 (-) 1029 WP_039540325.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AABD45_RS06920 (AABD45_07460) - 1486484..1487182 (+) 699 WP_188012217.1 oxidoreductase -
  AABD45_RS06925 (AABD45_07465) sbcB 1487256..1488677 (+) 1422 WP_406849455.1 exodeoxyribonuclease I Machinery gene
  AABD45_RS06930 (AABD45_07470) - 1488723..1489094 (+) 372 WP_045588948.1 CidA/LrgA family protein -
  AABD45_RS06935 (AABD45_07475) - 1489097..1489774 (+) 678 WP_039449453.1 LrgB family protein -
  AABD45_RS06940 (AABD45_07480) - 1490098..1490490 (+) 393 WP_039540321.1 SulA-like leucine-rich domain-containing protein -
  AABD45_RS06945 (AABD45_07485) - 1490693..1491796 (+) 1104 WP_406849456.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AABD45_RS06950 (AABD45_07490) - 1491890..1492279 (-) 390 WP_017419941.1 hypothetical protein -
  AABD45_RS06955 (AABD45_07495) - 1492519..1493286 (-) 768 WP_017419940.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54787.97 Da        Isoelectric Point: 5.0999

>NTDB_id=972721 AABD45_RS06925 WP_406849455.1 1487256..1488677(+) (sbcB) [Vibrio vulnificus strain Per1]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLEIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSVEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=972721 AABD45_RS06925 WP_406849455.1 1487256..1488677(+) (sbcB) [Vibrio vulnificus strain Per1]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGTCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGAGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGCCCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTGGCGAATGGCATTGAACACAGCAACGCGCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTTTTTAGCATGCGCCATAAGCGTA
AACTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAGTAC
ACCAGTTGGATTGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGACTTACTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCGATTTTAGCTCCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAGTTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGCGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.508

99.789

0.803

Multiple sequence alignment