Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABD45_RS00625 Genome accession   NZ_CP150831
Coordinates   108922..109440 (+) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus strain Per1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 103922..114440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS00615 (AABD45_00615) gshA 106663..108228 (+) 1566 WP_045627736.1 glutamate--cysteine ligase -
  AABD45_RS00620 (AABD45_00620) - 108239..108871 (+) 633 WP_017421184.1 hypothetical protein -
  AABD45_RS00625 (AABD45_00625) luxS 108922..109440 (+) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  AABD45_RS00630 (AABD45_00630) - 109499..110776 (-) 1278 WP_038941428.1 HlyC/CorC family transporter -
  AABD45_RS00635 (AABD45_00635) - 110863..111657 (-) 795 WP_011079539.1 inner membrane protein YpjD -
  AABD45_RS00640 (AABD45_00640) ffh 111871..113247 (+) 1377 WP_011079540.1 signal recognition particle protein -
  AABD45_RS00645 (AABD45_00645) rpsP 113543..113791 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  AABD45_RS00650 (AABD45_00650) rimM 113807..114355 (+) 549 WP_038941427.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=972711 AABD45_RS00625 WP_017421185.1 108922..109440(+) (luxS) [Vibrio vulnificus strain Per1]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=972711 AABD45_RS00625 WP_017421185.1 108922..109440(+) (luxS) [Vibrio vulnificus strain Per1]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTATTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTATTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAGCTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment