Detailed information NTG0972708

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AABD45_RS00505
• Genome accession: NZ_CP150831
• Coordinates: 86559..87551 (+)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain Per1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 81559..92551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD45_RS00470 (AABD45_00470)	ftsB	81590..81871 (+)	282	WP_017420271.1	cell division protein FtsB	-
AABD45_RS00475 (AABD45_00475)	ispD	81871..82584 (+)	714	WP_039548274.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AABD45_RS00480 (AABD45_00480)	ispF	82581..83057 (+)	477	WP_017420273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AABD45_RS00485 (AABD45_00485)	truD	83093..84136 (+)	1044	WP_039536055.1	tRNA pseudouridine(13) synthase TruD	-
AABD45_RS00490 (AABD45_00490)	surE	84142..84909 (+)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
AABD45_RS00495 (AABD45_00495)	-	84912..85538 (+)	627	WP_038941444.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AABD45_RS00500 (AABD45_00500)	-	85582..86478 (+)	897	WP_406849489.1	peptidoglycan DD-metalloendopeptidase family protein	-
AABD45_RS00505 (AABD45_00505)	rpoS	86559..87551 (+)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
AABD45_RS00510 (AABD45_00510)	mutS	87627..90188 (-)	2562	WP_038941441.1	DNA mismatch repair protein MutS	-
AABD45_RS00515 (AABD45_00515)	pncC	90272..90775 (+)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
AABD45_RS00520 (AABD45_00520)	recA	90908..91957 (+)	1050	WP_038941440.1	recombinase RecA	Machinery gene
AABD45_RS00525 (AABD45_00525)	recX	92067..92528 (+)	462	WP_038964353.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=972708 AABD45_RS00505 WP_017420278.1 86559..87551(+) (rpoS) [Vibrio vulnificus strain Per1]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=972708 AABD45_RS00505 WP_017420278.1 86559..87551(+) (rpoS) [Vibrio vulnificus strain Per1]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTTGAGAAATTCGATCCTG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGTATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCAAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833