Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ACL66B_RS20635 Genome accession   NZ_CP178617
Coordinates   3981648..3982337 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain QXKL-3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3976648..3987337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS20615 (ACL66B_20615) yxeA 3977553..3977900 (-) 348 WP_021481023.1 YxeA family protein -
  ACL66B_RS20620 (ACL66B_20620) yxdM 3977914..3979782 (-) 1869 WP_017696088.1 ABC transporter permease YxdM -
  ACL66B_RS20625 (ACL66B_20625) yxdL 3979757..3980530 (-) 774 WP_041850316.1 ABC transporter ATP-binding protein YxdL -
  ACL66B_RS20630 (ACL66B_20630) yxdK 3980674..3981651 (-) 978 WP_043940238.1 two-component system sensor histidine kinase YxdK -
  ACL66B_RS20635 (ACL66B_20635) braR 3981648..3982337 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  ACL66B_RS20640 (ACL66B_20640) iolJ 3982445..3983317 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  ACL66B_RS20645 (ACL66B_20645) iolI 3983338..3984174 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  ACL66B_RS20650 (ACL66B_20650) iolH 3984260..3985129 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  ACL66B_RS20655 (ACL66B_20655) iolG 3985149..3986183 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=972686 ACL66B_RS20635 WP_003243527.1 3981648..3982337(-) (braR) [Bacillus subtilis strain QXKL-3]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=972686 ACL66B_RS20635 WP_003243527.1 3981648..3982337(-) (braR) [Bacillus subtilis strain QXKL-3]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406