Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   WOC64_RS11210 Genome accession   NZ_CP150788
Coordinates   2264508..2265494 (-) Length   328 a.a.
NCBI ID   WP_368410663.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20816     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2259508..2270494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC64_RS11185 (WOC64_11180) - 2259767..2260114 (-) 348 WP_001242101.1 hypothetical protein -
  WOC64_RS11190 (WOC64_11185) - 2260300..2260893 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  WOC64_RS11195 (WOC64_11190) - 2260997..2261362 (+) 366 WP_000214065.1 truncated hemoglobin YjbI -
  WOC64_RS11200 (WOC64_11195) yjbH 2261385..2262192 (+) 808 Protein_2179 protease adaptor protein YjbH -
  WOC64_RS11205 (WOC64_11200) pepF 2262652..2264460 (-) 1809 WP_000082731.1 oligoendopeptidase F -
  WOC64_RS11210 (WOC64_11205) coiA 2264508..2265494 (-) 987 WP_368410663.1 competence protein CoiA Machinery gene
  WOC64_RS11215 (WOC64_11210) mecA 2265615..2266334 (-) 720 WP_001217730.1 adaptor protein MecA -
  WOC64_RS11220 (WOC64_11215) spxA 2266705..2267100 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  WOC64_RS11225 (WOC64_11220) trpS 2267395..2268384 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  WOC64_RS11230 (WOC64_11225) opp4C 2268426..2269307 (-) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  WOC64_RS11235 (WOC64_11230) opp4B 2269319..2270281 (-) 963 WP_000593417.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38831.51 Da        Isoelectric Point: 9.7121

>NTDB_id=972677 WOC64_RS11210 WP_368410663.1 2264508..2265494(-) (coiA) [Staphylococcus aureus strain TUM20816]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGQKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=972677 WOC64_RS11210 WP_368410663.1 2264508..2265494(-) (coiA) [Staphylococcus aureus strain TUM20816]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCAGAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment