Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   ACL66B_RS16375 Genome accession   NZ_CP178617
Coordinates   3130414..3131274 (-) Length   286 a.a.
NCBI ID   WP_041850585.1    Uniprot ID   -
Organism   Bacillus subtilis strain QXKL-3     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3125414..3136274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS16340 (ACL66B_16340) mrpE 3125644..3126120 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  ACL66B_RS16345 (ACL66B_16345) mrpF 3126120..3126404 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACL66B_RS16350 (ACL66B_16350) mnhG 3126388..3126762 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  ACL66B_RS16355 (ACL66B_16355) yuxO 3126801..3127181 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  ACL66B_RS16360 (ACL66B_16360) comA 3127200..3127844 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACL66B_RS16365 (ACL66B_16365) comP 3127925..3130225 (-) 2301 WP_088300729.1 histidine kinase Regulator
  ACL66B_RS16370 (ACL66B_16370) comX 3130237..3130401 (-) 165 WP_015384519.1 competence pheromone ComX -
  ACL66B_RS16375 (ACL66B_16375) comQ 3130414..3131274 (-) 861 WP_041850585.1 polyprenyl synthetase family protein Regulator
  ACL66B_RS16380 (ACL66B_16380) degQ 3131458..3131598 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACL66B_RS16385 (ACL66B_16385) - 3131820..3131882 (+) 63 Protein_3161 hypothetical protein -
  ACL66B_RS16390 (ACL66B_16390) - 3132061..3132429 (+) 369 WP_041850584.1 hypothetical protein -
  ACL66B_RS16395 (ACL66B_16395) pdeH 3132405..3133634 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  ACL66B_RS16400 (ACL66B_16400) pncB 3133771..3135243 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  ACL66B_RS16405 (ACL66B_16405) pncA 3135259..3135810 (-) 552 WP_043940186.1 cysteine hydrolase family protein -

Sequence


Protein


Download         Length: 286 a.a.        Molecular weight: 32545.49 Da        Isoelectric Point: 4.8309

>NTDB_id=972663 ACL66B_RS16375 WP_041850585.1 3130414..3131274(-) (comQ) [Bacillus subtilis strain QXKL-3]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIELLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFSQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIIAQIENDYRGLYYLNNDFIQKKNTLAYLYLNKRFNAASAEILSWYENTELFLSLNSKQIK
EKLTEAGVVQYLLVMKHLSLQKLKKEIARLELQENKIKKLITGIIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=972663 ACL66B_RS16375 WP_041850585.1 3130414..3131274(-) (comQ) [Bacillus subtilis strain QXKL-3]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATTGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTTCACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCGC
CGCAAACTGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGCTGGCAACAGGCAAATACCATCCCATTGTAGCTTCTTATTCTTATGAACTTGGGATTATTGCACAAATCGAAAATGA
TTACCGAGGTTTATATTATCTAAATAACGATTTTATTCAGAAGAAAAACACATTGGCATACTTATACTTAAATAAACGTT
TTAATGCAGCTTCTGCAGAAATCTTGAGTTGGTATGAAAATACTGAGTTGTTCTTATCATTGAATTCCAAACAAATAAAA
GAAAAATTAACTGAGGCAGGCGTAGTGCAATATTTACTTGTAATGAAACACTTGTCATTACAAAAACTAAAGAAAGAAAT
TGCTAGATTAGAATTGCAAGAGAATAAAATAAAAAAATTAATAACAGGAATCATAAAATAA

Domains


Predicted by InterProScan.

(39-197)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.423

99.301

0.451


Multiple sequence alignment