Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACL66B_RS02375 Genome accession   NZ_CP178617
Coordinates   467557..467991 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain QXKL-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462557..472991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS02345 (ACL66B_02345) ydaD 463205..464065 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  ACL66B_RS02350 (ACL66B_02350) lyxE 464081..464584 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ACL66B_RS02355 (ACL66B_02355) ydaF 464672..465223 (+) 552 WP_041850710.1 GNAT family N-acetyltransferase -
  ACL66B_RS02360 (ACL66B_02360) ydaG 465301..465723 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACL66B_RS02365 (ACL66B_02365) amj 466229..467038 (+) 810 WP_003234394.1 lipid II flippase Amj -
  ACL66B_RS02370 (ACL66B_02370) ydzA 467082..467372 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  ACL66B_RS02375 (ACL66B_02375) lrpC 467557..467991 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACL66B_RS02380 (ACL66B_02380) topB 468056..470239 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  ACL66B_RS02385 (ACL66B_02385) ephJ 470442..471530 (+) 1089 WP_003246551.1 lipoprotein -
  ACL66B_RS02390 (ACL66B_02390) epsK 471511..472362 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=972564 ACL66B_RS02375 WP_003246585.1 467557..467991(+) (lrpC) [Bacillus subtilis strain QXKL-3]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=972564 ACL66B_RS02375 WP_003246585.1 467557..467991(+) (lrpC) [Bacillus subtilis strain QXKL-3]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1