Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | WOC49_RS01100 | Genome accession | NZ_CP150783 |
| Coordinates | 207639..208142 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain TUM20818 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 186491..208894 | 207639..208142 | within | 0 |
Gene organization within MGE regions
Location: 186491..208894
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WOC49_RS00940 (WOC49_00940) | - | 186491..186742 (-) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| WOC49_RS00945 (WOC49_00945) | - | 187042..187305 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| WOC49_RS00950 (WOC49_00950) | - | 187443..188015 (-) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| WOC49_RS00955 (WOC49_00955) | - | 188196..188564 (-) | 369 | WP_108932421.1 | YxeA family protein | - |
| WOC49_RS00960 (WOC49_00960) | selX | 188933..189544 (-) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| WOC49_RS00965 (WOC49_00965) | - | 189750..190451 (+) | 702 | Protein_171 | tyrosine-type recombinase/integrase | - |
| WOC49_RS00970 (WOC49_00970) | - | 190490..191428 (+) | 939 | WP_001822249.1 | Abi family protein | - |
| WOC49_RS00975 (WOC49_00975) | - | 192567..192752 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| WOC49_RS00980 (WOC49_00980) | - | 192754..192864 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| WOC49_RS00985 (WOC49_00985) | - | 192935..193087 (-) | 153 | WP_001795626.1 | hypothetical protein | - |
| WOC49_RS00990 (WOC49_00990) | - | 193330..193446 (-) | 117 | Protein_176 | hypothetical protein | - |
| WOC49_RS00995 (WOC49_00995) | - | 193935..194903 (-) | 969 | WP_000801979.1 | Abi family protein | - |
| WOC49_RS01000 (WOC49_01005) | - | 195180..195749 (-) | 570 | WP_001293080.1 | terminase small subunit | - |
| WOC49_RS01005 (WOC49_01010) | - | 195746..196087 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| WOC49_RS01010 (WOC49_01015) | - | 196090..196617 (-) | 528 | WP_000771356.1 | spore coat protein | - |
| WOC49_RS01015 (WOC49_01020) | - | 196668..196886 (-) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| WOC49_RS01020 (WOC49_01025) | - | 196904..197482 (-) | 579 | WP_000846292.1 | hypothetical protein | - |
| WOC49_RS01025 (WOC49_01030) | - | 197494..197835 (-) | 342 | WP_001161659.1 | hypothetical protein | - |
| WOC49_RS01030 (WOC49_01035) | - | 198182..198823 (-) | 642 | WP_001019769.1 | hypothetical protein | - |
| WOC49_RS01035 (WOC49_01040) | - | 198820..199104 (-) | 285 | WP_000998182.1 | hypothetical protein | - |
| WOC49_RS01040 (WOC49_01045) | - | 199106..199468 (-) | 363 | WP_108932420.1 | pathogenicity island protein | - |
| WOC49_RS01045 (WOC49_01050) | - | 199754..201223 (-) | 1470 | WP_001795628.1 | virulence-associated E family protein | - |
| WOC49_RS01050 (WOC49_01055) | - | 201240..202109 (-) | 870 | WP_001002700.1 | primase alpha helix C-terminal domain-containing protein | - |
| WOC49_RS01055 (WOC49_01060) | tscT | 202173..202490 (-) | 318 | WP_001103936.1 | type II toxin-antitoxin system toxin TscT | - |
| WOC49_RS01060 (WOC49_01065) | tscA | 202493..202702 (-) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| WOC49_RS01065 (WOC49_01070) | - | 202695..202841 (-) | 147 | WP_031824147.1 | hypothetical protein | - |
| WOC49_RS01070 (WOC49_01075) | - | 202853..203125 (-) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| WOC49_RS01075 (WOC49_01080) | - | 203126..203338 (-) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| WOC49_RS01080 (WOC49_01085) | - | 203482..204177 (+) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| WOC49_RS01085 (WOC49_01090) | - | 204633..205850 (+) | 1218 | WP_000270130.1 | site-specific integrase | - |
| WOC49_RS01090 (WOC49_01095) | - | 206333..207163 (+) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| WOC49_RS01095 (WOC49_01100) | rpsR | 207345..207587 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| WOC49_RS01100 (WOC49_01105) | ssbA | 207639..208142 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| WOC49_RS01105 (WOC49_01110) | rpsF | 208163..208459 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| WOC49_RS01110 (WOC49_01115) | - | 208703..208894 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=972557 WOC49_RS01100 WP_000934799.1 207639..208142(-) (ssbA) [Staphylococcus aureus strain TUM20818]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=972557 WOC49_RS01100 WP_000934799.1 207639..208142(-) (ssbA) [Staphylococcus aureus strain TUM20818]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |