Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   WOC48_RS04075 Genome accession   NZ_CP150777
Coordinates   806600..807586 (-) Length   328 a.a.
NCBI ID   WP_000959293.1    Uniprot ID   A0A641A950
Organism   Staphylococcus aureus strain TUM20825     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 801600..812586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC48_RS04050 (WOC48_04040) - 801860..802207 (-) 348 WP_001242102.1 hypothetical protein -
  WOC48_RS04055 (WOC48_04045) - 802393..802986 (+) 594 WP_000224612.1 CYTH domain-containing protein -
  WOC48_RS04060 (WOC48_04050) - 803090..803455 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  WOC48_RS04065 (WOC48_04055) yjbH 803478..804284 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  WOC48_RS04070 (WOC48_04060) pepF 804744..806552 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  WOC48_RS04075 (WOC48_04065) coiA 806600..807586 (-) 987 WP_000959293.1 competence protein CoiA Machinery gene
  WOC48_RS04080 (WOC48_04070) mecA 807707..808426 (-) 720 WP_001217728.1 adaptor protein MecA -
  WOC48_RS04085 (WOC48_04075) spxA 808797..809192 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  WOC48_RS04090 (WOC48_04080) trpS 809487..810476 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  WOC48_RS04095 (WOC48_04085) opp4C 810518..811399 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  WOC48_RS04100 (WOC48_04090) opp4B 811411..812373 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38898.54 Da        Isoelectric Point: 9.7732

>NTDB_id=972439 WOC48_RS04075 WP_000959293.1 806600..807586(-) (coiA) [Staphylococcus aureus strain TUM20825]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=972439 WOC48_RS04075 WP_000959293.1 806600..807586(-) (coiA) [Staphylococcus aureus strain TUM20825]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A950

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

100

100

1
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment