Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLZ2J_RS19635 Genome accession   NZ_CP178514
Coordinates   3738473..3739606 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain BS18-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3733473..3744606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS19595 ywnA 3733649..3734050 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  ACLZ2J_RS19600 ureC 3734185..3735894 (-) 1710 WP_003243090.1 urease subunit alpha -
  ACLZ2J_RS19605 ureB 3735891..3736265 (-) 375 WP_003227726.1 urease subunit beta -
  ACLZ2J_RS19610 ureA 3736262..3736579 (-) 318 WP_003227724.1 urease subunit gamma -
  ACLZ2J_RS19615 - 3736760..3736924 (-) 165 WP_015649919.1 hypothetical protein -
  ACLZ2J_RS19620 - 3737097..3737279 (-) 183 WP_003227720.1 transporter substrate-binding protein -
  ACLZ2J_RS19625 csbD 3737577..3737765 (-) 189 WP_003227718.1 stress response protein CsbD -
  ACLZ2J_RS19630 - 3737838..3738317 (-) 480 WP_003244390.1 hypothetical protein -
  ACLZ2J_RS19635 rapC 3738473..3739606 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  ACLZ2J_RS19640 moaA 3739798..3740823 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  ACLZ2J_RS19645 fdhD 3740839..3741627 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACLZ2J_RS19650 - 3741873..3742034 (-) 162 WP_003227706.1 hypothetical protein -
  ACLZ2J_RS19655 ywmD 3742128..3742802 (-) 675 WP_003243553.1 vWA domain-containing protein -
  ACLZ2J_RS19660 - 3742855..3742995 (-) 141 WP_003227702.1 hypothetical protein -
  ACLZ2J_RS19665 ywmC 3743126..3743809 (-) 684 WP_003227700.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=972199 ACLZ2J_RS19635 WP_003227715.1 3738473..3739606(-) (rapC) [Bacillus subtilis strain BS18-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=972199 ACLZ2J_RS19635 WP_003227715.1 3738473..3739606(-) (rapC) [Bacillus subtilis strain BS18-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424