Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   WOC50_RS10415 Genome accession   NZ_CP150766
Coordinates   2097036..2098385 (+) Length   449 a.a.
NCBI ID   WP_000815640.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20929     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2097036..2115435 2097036..2098385 within 0
SCCmec 2097036..2106800 2097036..2098385 within 0


Gene organization within MGE regions


Location: 2097036..2115435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC50_RS10415 (WOC50_10425) ccrA 2097036..2098385 (+) 1350 WP_000815640.1 cassette chromosome recombinase CcrA Machinery gene
  WOC50_RS10420 (WOC50_10430) ccrB 2098407..2100035 (+) 1629 WP_001186608.1 cassette chromosome recombinase CcrB Machinery gene
  WOC50_RS10425 (WOC50_10435) - 2100557..2100907 (+) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  WOC50_RS10430 (WOC50_10440) - 2100994..2101305 (+) 312 WP_000700851.1 DUF960 family protein -
  WOC50_RS10435 (WOC50_10445) - 2101320..2101826 (+) 507 WP_001092189.1 DUF1643 domain-containing protein -
  WOC50_RS10440 (WOC50_10450) - 2101875..2103485 (+) 1611 Protein_2016 IS1182 family transposase -
  WOC50_RS10445 (WOC50_10455) - 2103476..2103718 (-) 243 Protein_2017 type I restriction enzyme endonuclease domain-containing protein -
  WOC50_RS10450 (WOC50_10460) - 2103708..2104694 (-) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  WOC50_RS10455 (WOC50_10465) mecA 2104791..2106800 (+) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  WOC50_RS10460 (WOC50_10470) - 2106846..2107274 (-) 429 WP_000872606.1 MaoC family dehydratase -
  WOC50_RS10465 (WOC50_10475) - 2107371..2108114 (-) 744 WP_000958858.1 glycerophosphoryl diester phosphodiesterase -
  WOC50_RS10470 (WOC50_10480) - 2108991..2109380 (-) 390 WP_020444595.1 hydroxymethylglutaryl-CoA synthase -
  WOC50_RS10475 (WOC50_10485) - 2109416..2110090 (+) 675 WP_001106057.1 IS6-like element IS257 family transposase -
  WOC50_RS10480 (WOC50_10490) aadD1 2110283..2111053 (+) 771 WP_001795128.1 aminoglycoside O-nucleotidyltransferase ANT(4')-Ia -
  WOC50_RS10485 (WOC50_10495) bleO 2111270..2111674 (+) 405 WP_368410423.1 bleomycin binding protein -
  WOC50_RS10490 (WOC50_10500) mobV 2112181..2113442 (+) 1262 Protein_2026 MobV family relaxase -
  WOC50_RS10495 (WOC50_10505) - 2113687..2114670 (+) 984 Protein_2027 protein rep -
  WOC50_RS10500 (WOC50_10510) - 2114761..2115435 (+) 675 WP_001106057.1 IS6-like element IS257 family transposase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52663.34 Da        Isoelectric Point: 9.9639

>NTDB_id=972196 WOC50_RS10415 WP_000815640.1 2097036..2098385(+) (ccrA) [Staphylococcus aureus strain TUM20929]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYH
NGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
YEQAQRLRLQKQTKQTPSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV
CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHIIQ
NIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=972196 WOC50_RS10415 WP_000815640.1 2097036..2098385(+) (ccrA) [Staphylococcus aureus strain TUM20929]
ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGTCGCAAAGATAATCGTAGTGGGT
ATCGACAAATAACACAATTAATTCAACAAGGACAGTGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
CTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACGTACCATGTTCATATCTTAAGCGTACATGATGGTTACTTTGA
TATGGATCAAGCTTTCGACCGACTCAAGCTTAATATCTTCATCAGTTTAGCCGAACTTGAATCGGATAACATTGGAGAAC
AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACACATGCACCTTTTGGTTACGAATATCAC
AACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGTCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATCATCA
ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGCCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA
TATGAGCAAGCGCAGAGACTTCGATTGCAAAAACAAACCAAACAGACACCTTCGGATAATCAACTCAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA
AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG
TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA
CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA
GAGAGCAAACACAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAACACATCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCCTATATTGAAACCATTCACATTACGAAAGATAAAAATCT
TATAGGAATCTATTTCAAAAATGAACCACTCAATATTGTCAATCAAACCATGCAATCATCGATTGCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(169-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus N315

97.55

100

0.976
  ccrA Staphylococcus aureus COL

75.947

100

0.759

Multiple sequence alignment