Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLZ2J_RS11465 Genome accession   NZ_CP178514
Coordinates   2228865..2230001 (+) Length   378 a.a.
NCBI ID   WP_019712879.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS18-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2223865..2235001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS11440 - 2223923..2224744 (+) 822 WP_026009860.1 hypothetical protein -
  ACLZ2J_RS11445 yomE 2224781..2226715 (+) 1935 WP_413154936.1 phosphodiester glycosidase family protein -
  ACLZ2J_RS11450 - 2226890..2227957 (+) 1068 WP_019712882.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACLZ2J_RS11455 - 2228073..2228465 (+) 393 WP_019712881.1 hypothetical protein -
  ACLZ2J_RS11460 - 2228486..2228737 (+) 252 WP_019712880.1 phage holin -
  ACLZ2J_RS11465 rapC 2228865..2230001 (+) 1137 WP_019712879.1 Rap family tetratricopeptide repeat protein Regulator
  ACLZ2J_RS11470 - 2229991..2230167 (+) 177 WP_019712878.1 hypothetical protein -
  ACLZ2J_RS11475 uvrX 2230209..2231459 (-) 1251 WP_019712877.1 DNA polymerase thumb domain-containing protein -
  ACLZ2J_RS11480 yolD 2231452..2231784 (-) 333 WP_019712876.1 YolD-like family protein -
  ACLZ2J_RS11485 - 2231958..2232293 (+) 336 WP_019712875.1 hypothetical protein -
  ACLZ2J_RS11490 - 2232336..2232692 (-) 357 WP_019712874.1 hypothetical protein -
  ACLZ2J_RS11495 yolA 2232698..2233165 (-) 468 WP_019712873.1 YolA family protein -
  ACLZ2J_RS11500 - 2233404..2233484 (+) 81 WP_127721184.1 putative holin-like toxin -
  ACLZ2J_RS11505 yokL 2233778..2234311 (-) 534 Protein_2214 GNAT family N-acetyltransferase -
  ACLZ2J_RS11510 yokK 2234347..2234925 (-) 579 WP_019712871.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44846.09 Da        Isoelectric Point: 5.1452

>NTDB_id=972141 ACLZ2J_RS11465 WP_019712879.1 2228865..2230001(+) (rapC) [Bacillus subtilis strain BS18-1]
MEQMISSSKVGVKINEWYKYIRLFSVPDSEILKAEVEEEIRHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTLNEERPKIS
DLLEKIESSQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDYPEKAIPHFKNALDKAREIDMSRLIGSSLYNLGLCSFAEEAYEKAS
EYFKEGIRVYQDNGYEHSNRILDILLMLTKTTFKMRNHSEGISWCAHGLSLSKNLNDEIMAKMFEFIHALYVDNDNEKLN
SILNYLELKSMLSDVEDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=972141 ACLZ2J_RS11465 WP_019712879.1 2228865..2230001(+) (rapC) [Bacillus subtilis strain BS18-1]
TTGGAGCAGATGATCTCTTCTTCTAAAGTTGGAGTGAAAATAAATGAGTGGTATAAATACATAAGATTATTTAGTGTCCC
AGATTCGGAAATATTGAAAGCTGAGGTCGAGGAAGAAATAAGGCATATGAAAGAAGATCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAGCTGATGCTGGACTACCTTGAACCAAAAACATTGAACGAAGAACGACCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGTAGTCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGGGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAAATTGAAAGAGCTGAATTCCACTATAAAGTTGCAGAAATTTATTATCATATGAAGCAAACACATATGTCGATGCAC
CACATTGTTCAAGCAATCGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTTATCGG
ACTGAACTATTTGGATATGGACTACCCTGAAAAAGCGATCCCTCATTTTAAAAATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTTTACAATCTCGGCTTATGTTCCTTTGCTGAGGAAGCTTATGAAAAGGCATCT
GAGTACTTCAAGGAGGGCATTAGAGTATATCAGGATAATGGGTATGAACATTCAAATCGCATATTAGATATCTTACTTAT
GTTGACAAAAACCACTTTTAAAATGAGAAATCACTCCGAGGGAATTTCTTGGTGTGCACACGGTCTGTCTTTGTCCAAAA
ATTTAAACGATGAGATTATGGCAAAAATGTTTGAATTCATTCATGCCTTATATGTAGATAATGACAATGAAAAATTAAAT
TCAATTCTAAATTATTTAGAATTAAAGTCAATGCTTTCAGACGTGGAGGATTTAGCATCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGCTTATTATGAAAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(343-367)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.031

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.46

Multiple sequence alignment