Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACLZ2J_RS09155 Genome accession   NZ_CP178514
Coordinates   1753442..1753873 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain BS18-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1748442..1758873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS09135 spoVS 1749003..1749263 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ACLZ2J_RS09140 tdh 1749529..1750572 (+) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  ACLZ2J_RS09145 kbl 1750585..1751763 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  ACLZ2J_RS09150 miaB 1751911..1753440 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACLZ2J_RS09155 ymcA 1753442..1753873 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ACLZ2J_RS09160 cotE 1754135..1754680 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ACLZ2J_RS09165 hexA 1754813..1757389 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=972133 ACLZ2J_RS09155 WP_003231834.1 1753442..1753873(+) (ymcA) [Bacillus subtilis strain BS18-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=972133 ACLZ2J_RS09155 WP_003231834.1 1753442..1753873(+) (ymcA) [Bacillus subtilis strain BS18-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1