Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACLZ2J_RS02420 Genome accession   NZ_CP178514
Coordinates   475596..476030 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BS18-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470596..481030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS02390 ydaD 471244..472104 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  ACLZ2J_RS02395 lyxE 472120..472623 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  ACLZ2J_RS02400 ydaF 472711..473262 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  ACLZ2J_RS02405 ydaG 473340..473762 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACLZ2J_RS02410 amj 474268..475077 (+) 810 WP_032722918.1 lipid II flippase Amj -
  ACLZ2J_RS02415 ydzA 475121..475411 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  ACLZ2J_RS02420 lrpC 475596..476030 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACLZ2J_RS02425 topB 476095..478278 (+) 2184 WP_413155108.1 DNA topoisomerase III -
  ACLZ2J_RS02430 ephJ 478481..479569 (+) 1089 WP_003246551.1 lipoprotein -
  ACLZ2J_RS02435 epsK 479550..480401 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=972078 ACLZ2J_RS02420 WP_003246585.1 475596..476030(+) (lrpC) [Bacillus subtilis strain BS18-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=972078 ACLZ2J_RS02420 WP_003246585.1 475596..476030(+) (lrpC) [Bacillus subtilis strain BS18-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1