Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACL001_RS04465 Genome accession   NZ_CP178418
Coordinates   945789..947177 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain L4796hy     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940789..952177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL001_RS04440 (ACL001_04440) fdhD 941225..942016 (+) 792 WP_000187631.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ACL001_RS04445 (ACL001_04445) - 942136..942527 (+) 392 Protein_849 YkvA family protein -
  ACL001_RS04450 (ACL001_04450) - 942632..943699 (+) 1068 WP_000706083.1 4-phosphoerythronate dehydrogenase -
  ACL001_RS04455 (ACL001_04455) epmA 943696..944670 (+) 975 WP_000059535.1 EF-P lysine aminoacylase EpmA -
  ACL001_RS04460 (ACL001_04460) - 944729..945706 (-) 978 WP_000451848.1 Tim44 domain-containing protein -
  ACL001_RS04465 (ACL001_04465) radA/sms 945789..947177 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  ACL001_RS04470 (ACL001_04470) - 947667..949073 (+) 1407 WP_000070815.1 amino acid permease -
  ACL001_RS04475 (ACL001_04475) lptM 949214..949438 (+) 225 WP_001255198.1 LPS translocon maturation chaperone LptM -
  ACL001_RS04480 (ACL001_04480) lysA 949461..950711 (+) 1251 WP_000011145.1 diaminopimelate decarboxylase -
  ACL001_RS04485 (ACL001_04485) dapF 950717..951562 (+) 846 WP_000923484.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=972004 ACL001_RS04465 WP_000048860.1 945789..947177(-) (radA/sms) [Acinetobacter baumannii strain L4796hy]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=972004 ACL001_RS04465 WP_000048860.1 945789..947177(-) (radA/sms) [Acinetobacter baumannii strain L4796hy]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAGCTAGAACCCACTACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACAGGTGAGGAATCGCTATCAC
AGGTTGCCTTACGCGCCCAACGTCTTGACCTACCAACAGACCAATTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGCCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGTGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATTTTCTTAAGTCGTTATGACGAAGCCATTC
CAGGTTCAATTGTCATGATTAGCCGTGAAGGCACTCGCCCACTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGTTGCTTGCTGTTATGCATCGTCATGGGGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTGCGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTTTCA
GGTGAAATTCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGCTTTAAATACGTCATCTTACC
AAGAGGTAATGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTCAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422