Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACL000_RS10200 Genome accession   NZ_CP178412
Coordinates   2146892..2147527 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain L4793hy     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2141892..2152527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL000_RS10175 (ACL000_10175) - 2141948..2142928 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ACL000_RS10180 (ACL000_10180) kdsB 2142940..2143701 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACL000_RS10185 (ACL000_10185) lpxK 2143711..2144721 (-) 1011 WP_000050447.1 tetraacyldisaccharide 4'-kinase -
  ACL000_RS10190 (ACL000_10190) msbA 2144724..2146451 (-) 1728 WP_001070725.1 lipid A export permease/ATP-binding protein MsbA -
  ACL000_RS10195 (ACL000_10195) - 2146448..2146876 (-) 429 WP_000669686.1 ExbD/TolR family protein -
  ACL000_RS10200 (ACL000_10200) exbB 2146892..2147527 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACL000_RS10205 (ACL000_10205) - 2147577..2148464 (-) 888 WP_000023427.1 ParB/RepB/Spo0J family partition protein -
  ACL000_RS10210 (ACL000_10210) - 2148461..2149243 (-) 783 WP_000057212.1 ParA family protein -
  ACL000_RS10215 (ACL000_10215) rsmG 2149265..2149897 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ACL000_RS10220 (ACL000_10220) murU 2149985..2150674 (-) 690 WP_000646451.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ACL000_RS10225 (ACL000_10225) - 2150674..2151687 (-) 1014 WP_001096102.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=971946 ACL000_RS10200 WP_000264035.1 2146892..2147527(-) (exbB) [Acinetobacter baumannii strain L4793hy]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=971946 ACL000_RS10200 WP_000264035.1 2146892..2147527(-) (exbB) [Acinetobacter baumannii strain L4793hy]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment