Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AACI72_RS05300 Genome accession   NZ_AP029008
Coordinates   1107388..1108008 (-) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain MAFF 211521     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1102388..1113008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACI72_RS05270 (MAFF211521_10310) - 1102888..1103646 (-) 759 WP_019718335.1 3-hydroxyacyl-CoA dehydrogenase -
  AACI72_RS05275 (MAFF211521_10320) adk 1103807..1104475 (-) 669 WP_011002448.1 adenylate kinase -
  AACI72_RS05280 (MAFF211521_10330) kdsB 1104795..1105601 (-) 807 WP_016725950.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AACI72_RS05285 (MAFF211521_10340) - 1105620..1105808 (-) 189 WP_003266270.1 Trm112 family protein -
  AACI72_RS05290 (MAFF211521_10350) lpxK 1105869..1106918 (-) 1050 WP_021155356.1 tetraacyldisaccharide 4'-kinase -
  AACI72_RS05295 (MAFF211521_10360) - 1106934..1107365 (-) 432 WP_011002445.1 biopolymer transporter ExbD -
  AACI72_RS05300 (MAFF211521_10370) exbB 1107388..1108008 (-) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AACI72_RS05305 (MAFF211521_10390) xseA 1109344..1110786 (+) 1443 WP_118909617.1 exodeoxyribonuclease VII large subunit -
  AACI72_RS05310 (MAFF211521_10400) sodB 1110932..1111510 (+) 579 WP_011002442.1 superoxide dismutase [Fe] -
  AACI72_RS05315 (MAFF211521_10410) - 1111876..1112844 (-) 969 WP_011002441.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=97190 AACI72_RS05300 WP_011002444.1 1107388..1108008(-) (exbB) [Ralstonia pseudosolanacearum strain MAFF 211521]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=97190 AACI72_RS05300 WP_011002444.1 1107388..1108008(-) (exbB) [Ralstonia pseudosolanacearum strain MAFF 211521]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCAGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGTCAGAACGTCGCCCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403

Multiple sequence alignment