Detailed information NTG0971762

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACL09D_RS05475
• Genome accession: NZ_CP178401
• Coordinates: 1123231..1124157 (-)
• Length: 308 a.a.
• NCBI ID: WP_412916944.1
• Uniprot ID: -
• Organism: Escherichia coli strain N1286
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1118231..1129157

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL09D_RS05450 (ACL09D_05450)	ygbN	1118886..1120250 (+)	1365	WP_000104439.1	GntP family transporter	-
ACL09D_RS05455 (ACL09D_05455)	-	1120289..1120525 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACL09D_RS05460 (ACL09D_05460)	-	1120536..1121963 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACL09D_RS05465 (ACL09D_05465)	-	1121963..1122556 (-)	594	WP_412916943.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACL09D_RS05470 (ACL09D_05470)	-	1122703..1123110 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACL09D_RS05475 (ACL09D_05475)	rpoS	1123231..1124157 (-)	927	WP_412916944.1	RNA polymerase sigma factor RpoS	Regulator
ACL09D_RS05480 (ACL09D_05480)	nlpD	1124220..1125314 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACL09D_RS05485 (ACL09D_05485)	pcm	1125499..1126125 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACL09D_RS05490 (ACL09D_05490)	surE	1126119..1126880 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACL09D_RS05495 (ACL09D_05495)	truD	1126861..1127910 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACL09D_RS05500 (ACL09D_05500)	ispF	1127907..1128386 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACL09D_RS05505 (ACL09D_05505)	ispD	1128386..1129096 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 35496.89 Da
• Isoelectric Point: 4.4103

>NTDB_id=971762 ACL09D_RS05475 WP_412916944.1 1123231..1124157(-) (rpoS) [Escherichia coli strain N1286]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMMDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTA
RELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKW
LFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE

Nucleotide

• Length: 927 bp

>NTDB_id=971762 ACL09D_RS05475 WP_412916944.1 1123231..1124157(-) (rpoS) [Escherichia coli strain N1286]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCG
CGCGGTAGAGAAGTTTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAAC
GGGCGATTATGAACCAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCA
CGTGAGTTGTCCCATAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGT
CAGCCGTATGCTTCGTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGG
ACATCCTGGCCGATGAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGG
CTGTTCGAGCTGAACGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGA
AGATGTAGGTCGTGAAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAA
TCCTGCAAACGCAGGGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (152-226)

• Sigma-70, region 4 (Sigma70_r4) (240-293)

• Sigma-70 region 2 (Sigma70_r2) (83-141)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.563	100	0.698