Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACK1X7_RS37295 Genome accession   NZ_CP178393
Coordinates   8649181..8649927 (+) Length   248 a.a.
NCBI ID   WP_413116280.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 8644181..8654927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS37280 (ACK1X7_37230) - 8644364..8644893 (+) 530 Protein_7372 site-specific integrase -
  ACK1X7_RS37285 (ACK1X7_37235) - 8645453..8646856 (-) 1404 WP_413116279.1 MFS transporter -
  ACK1X7_RS37290 (ACK1X7_37240) uvrA 8647175..8648925 (+) 1751 Protein_7374 excinuclease ABC subunit UvrA -
  ACK1X7_RS37295 (ACK1X7_37245) rpoS 8649181..8649927 (+) 747 WP_413116280.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27957.97 Da        Isoelectric Point: 9.1389

>NTDB_id=971727 ACK1X7_RS37295 WP_413116280.1 8649181..8649927(+) (rpoS) [Streptomyces sp. CY1]
MALDGHRAKNRLTEANMRLVVSIAKRFTGRGLQFLDLIQEGNIGLIRAVEKFDYAKGFKFSTYATWWIKQSVTRALADQS
RTIRVPAHAVEVMNRVERVRRELIIETGADPEPTTLAEKAGVTVERLEEIGSYNKEPISLDAIYSDEGNTAFGDLIVDSE
SPAPFNVVTAVFLQQTIRAVLANMTPREAGIISLRYGLYGDHPKTLEEIGKVYGVTRERIRQIETITMRKLRHPSRSHIL
RDYLDGGE

Nucleotide


Download         Length: 747 bp        

>NTDB_id=971727 ACK1X7_RS37295 WP_413116280.1 8649181..8649927(+) (rpoS) [Streptomyces sp. CY1]
TTGGCCCTGGACGGCCACCGTGCGAAGAACCGCCTCACCGAGGCCAATATGCGCCTGGTGGTCTCCATTGCCAAGCGTTT
CACCGGACGTGGATTGCAGTTCCTGGACTTGATCCAGGAAGGCAATATCGGGCTGATCAGAGCAGTGGAAAAGTTCGACT
ACGCCAAGGGATTCAAGTTCTCTACCTACGCCACGTGGTGGATCAAACAGTCGGTCACCCGGGCCCTGGCCGACCAGAGC
CGCACCATTCGCGTTCCGGCGCACGCCGTGGAGGTGATGAACCGCGTGGAACGGGTTCGTCGGGAACTAATTATCGAAAC
TGGAGCTGATCCCGAACCGACGACGCTGGCTGAAAAGGCAGGCGTCACGGTGGAGCGTCTGGAAGAAATTGGCTCTTACA
ACAAGGAGCCCATCTCCCTTGATGCCATATATTCCGATGAGGGTAACACCGCTTTCGGTGACCTCATCGTGGACAGCGAA
TCACCCGCTCCCTTCAACGTGGTCACAGCCGTCTTCCTCCAGCAAACCATTCGAGCCGTTCTTGCGAATATGACTCCCCG
CGAGGCCGGGATCATCTCTCTGCGCTACGGCCTTTACGGGGACCATCCCAAAACTCTCGAAGAAATCGGCAAAGTCTACG
GGGTAACACGCGAACGCATACGGCAAATTGAGACTATAACGATGAGGAAGCTGCGCCATCCCTCACGTTCACATATATTG
CGTGATTATTTGGATGGCGGCGAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(91-165)

Sigma-70 region 2 (Sigma70_r2)

(13-81)

Sigma-70, region 4 (Sigma70_r4)

(180-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.15

91.129

0.375

Multiple sequence alignment