Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   ACK1X7_RS33465 Genome accession   NZ_CP178393
Coordinates   7760984..7763143 (+) Length   719 a.a.
NCBI ID   WP_385145849.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 7755984..7768143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS33440 (ACK1X7_33390) - 7756188..7756421 (-) 234 WP_014055158.1 Lrp/AsnC family transcriptional regulator -
  ACK1X7_RS33445 (ACK1X7_33395) - 7756559..7757527 (+) 969 WP_385145841.1 thiamine-phosphate kinase -
  ACK1X7_RS33450 (ACK1X7_33400) thiD 7757669..7758499 (+) 831 WP_385145839.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACK1X7_RS33455 (ACK1X7_33405) rpmB 7758610..7758795 (-) 186 WP_009714771.1 50S ribosomal protein L28 -
  ACK1X7_RS33460 (ACK1X7_33410) - 7759062..7760855 (+) 1794 WP_385145837.1 DAK2 domain-containing protein -
  ACK1X7_RS33465 (ACK1X7_33415) recG 7760984..7763143 (+) 2160 WP_385145849.1 ATP-dependent DNA helicase RecG Machinery gene
  ACK1X7_RS33470 (ACK1X7_33420) rsmD 7763330..7763917 (+) 588 WP_382957432.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACK1X7_RS33475 (ACK1X7_33425) coaD 7763914..7764423 (+) 510 WP_253209493.1 pantetheine-phosphate adenylyltransferase -
  ACK1X7_RS33480 (ACK1X7_33430) - 7764531..7765655 (+) 1125 WP_390791912.1 cell division initiation protein -
  ACK1X7_RS33485 (ACK1X7_33435) - 7765858..7766448 (+) 591 WP_385145830.1 YceD family protein -
  ACK1X7_RS33490 (ACK1X7_33440) rpmF 7766451..7766624 (+) 174 WP_009714764.1 50S ribosomal protein L32 -
  ACK1X7_RS33495 (ACK1X7_33445) rnc 7766644..7767480 (+) 837 WP_390791911.1 ribonuclease III -

Sequence


Protein


Download         Length: 719 a.a.        Molecular weight: 77608.56 Da        Isoelectric Point: 5.9407

>NTDB_id=971720 ACK1X7_RS33465 WP_385145849.1 7760984..7763143(+) (recG) [Streptomyces sp. CY1]
MADHLDLHTVGDLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVHTFNGGRGRRLEVTITDGSGRLQLVFFGKG
VHKPRAELQPGTRAMFAGKVSVFNRKRQLAHPEFKALGAESGAEAVEAFAHQLLPLYPACKQMESWQIQQAVDTVLGPAG
HEEAALAGLVDPLPDSLREGRGLATLPEALRKIHRPATKTDIAMARDRLKWDEAFVLQVALARRRRAEAQLPAAPRKPVP
DGLLTAFDARLPFTLTDGQRRVSEEIFADLATDHPMHRLLQGEVGSGKTMVALRAMLGVVDAGGQAAMLAPTEVLAQQHH
RSITEMMGELAEGGMLGGAEQGTKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHALIEDKVQFHDLGLVVVDEQHRFG
VEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPSGRSPIASHVVPAKDKPHFLTRAWERVREEVAAG
HQGYVVCPRIGDDIGDEGETPKGAAGPSPEDEAEKRPPLAVVEVAEQLTKGPLSGLRVEVLHGRMQPEAKDDVMRRFAAG
EVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVTDMPEASPARSRLGAVAATLDGFEL
SRIDLEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEATAIVADDPELAGYPELRTALDALLDKEREEYLDKG

Nucleotide


Download         Length: 2160 bp        

>NTDB_id=971720 ACK1X7_RS33465 WP_385145849.1 7760984..7763143(+) (recG) [Streptomyces sp. CY1]
ATGGCCGACCACCTCGACCTGCACACCGTCGGCGATCTGCTGCACCACTACCCGCGGCGGTACGCGGAGCGAGGTGAGCT
GACCCGGCTGTCCGATCTGCCCCTGGATGAGCATGTGACCGTGGTGGCGCAGGTCGCCGACGCCCGGGTGCACACGTTCA
ACGGCGGCCGGGGCCGCCGGCTGGAGGTCACCATCACCGACGGCAGCGGCCGTCTCCAGCTCGTCTTCTTCGGCAAGGGT
GTGCACAAGCCGCGGGCGGAGCTCCAGCCCGGCACTCGCGCGATGTTCGCCGGGAAGGTCTCGGTCTTCAACCGCAAGCG
GCAGTTGGCCCATCCGGAGTTCAAGGCGCTGGGCGCGGAGAGCGGCGCGGAGGCCGTGGAGGCGTTCGCCCATCAGCTCC
TGCCGCTGTATCCGGCGTGCAAGCAGATGGAGTCCTGGCAGATCCAGCAGGCCGTCGACACCGTGCTGGGCCCGGCCGGC
CACGAGGAGGCCGCGCTGGCCGGGCTCGTCGACCCACTGCCCGACAGCCTCCGCGAGGGCCGGGGGCTGGCCACGCTCCC
CGAGGCGCTGCGCAAGATCCACCGACCCGCCACCAAGACCGATATCGCCATGGCCCGGGACCGCCTGAAGTGGGACGAGG
CGTTCGTCCTCCAGGTGGCGCTCGCCCGGCGCCGCCGGGCCGAGGCCCAACTGCCCGCGGCGCCCCGCAAGCCCGTCCCG
GACGGGCTGCTGACCGCCTTCGACGCCCGGCTGCCGTTCACCCTCACCGACGGCCAGCGCCGGGTCAGCGAGGAGATCTT
CGCCGACCTGGCCACCGACCACCCCATGCACCGGCTGCTCCAGGGCGAGGTCGGCTCCGGCAAGACCATGGTCGCGCTGC
GCGCGATGCTCGGCGTCGTGGACGCCGGGGGACAGGCGGCGATGCTCGCGCCCACCGAAGTGCTCGCCCAGCAGCACCAC
CGCTCGATCACCGAGATGATGGGGGAGCTGGCCGAGGGAGGCATGCTCGGGGGCGCGGAGCAGGGCACCAAGGTGGTGCT
GCTCACCGGTTCCATGGGCGCCGCGGCCCGCCGTCAGGCGCTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTGATCG
GCACCCATGCCCTGATCGAGGACAAGGTCCAGTTCCACGACCTGGGGCTGGTGGTCGTCGACGAGCAGCACCGCTTCGGG
GTCGAGCAGCGCGACGCCCTGCGCTCCAAGGGCAAGCAGCCCCCGCATCTGCTGGTGATGACGGCCACCCCGATCCCGCG
CACCGTCGCCATGACCGTCTTCGGCGATCTGGAGACCTCCGTCCTGGACCAGTTGCCCTCCGGCCGCTCCCCGATCGCCT
CCCATGTGGTGCCCGCCAAGGACAAGCCGCACTTCCTGACCCGCGCCTGGGAGCGGGTGCGCGAGGAGGTGGCGGCCGGG
CACCAGGGGTATGTGGTGTGCCCGCGGATCGGGGACGACATCGGCGACGAGGGGGAGACGCCCAAGGGCGCCGCGGGCCC
GTCCCCCGAGGACGAGGCCGAGAAGCGCCCGCCGCTGGCCGTCGTCGAGGTCGCCGAGCAGCTCACCAAGGGCCCGCTGA
GCGGTCTGCGGGTGGAGGTGCTGCACGGGCGGATGCAGCCCGAGGCCAAGGACGATGTGATGCGCCGCTTCGCCGCGGGC
GAGGTGGACGTCCTGGTCGCCACGACCGTCATCGAGGTCGGTGTGAACGTCCCCAACGCCACCGCCATGGTGATCATGGA
CGCCGACCGGTTCGGCGTCTCCCAGTTGCACCAGTTGCGCGGCCGCGTCGGCCGTGGCTCGGCCGCCGGGCTGTGCCTGC
TGGTGACCGACATGCCCGAGGCCAGCCCCGCCCGGTCGCGGCTGGGCGCGGTCGCGGCCACGCTCGACGGCTTCGAGCTG
TCCCGGATCGACCTGGAGCAGCGCCGGGAGGGCGATGTGCTCGGCCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGGT
CCTCGCCGTCATCGACGACGAGGAGGTCATCGCGGCGGCCCGGGAGGAGGCGACCGCGATCGTCGCCGACGACCCGGAGC
TGGCCGGATACCCCGAGCTGCGCACCGCGCTGGACGCCCTGCTGGACAAGGAGCGCGAGGAGTACCTCGACAAGGGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.068

97.914

0.373


Multiple sequence alignment