Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   WOC54_RS09115 Genome accession   NZ_CP150747
Coordinates   1859401..1860117 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain TUM22701     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854401..1865117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC54_RS09095 (WOC54_09125) - 1855493..1856443 (+) 951 WP_000790331.1 LacI family DNA-binding transcriptional regulator -
  WOC54_RS09100 (WOC54_09130) - 1856592..1858076 (+) 1485 WP_000141432.1 sucrose-6-phosphate hydrolase -
  WOC54_RS09105 (WOC54_09135) - 1858073..1859032 (+) 960 WP_341262135.1 carbohydrate kinase -
  WOC54_RS09110 (WOC54_09140) - 1859220..1859329 (-) 110 Protein_1784 hypothetical protein -
  WOC54_RS09115 (WOC54_09145) agrA 1859401..1860117 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  WOC54_RS09120 (WOC54_09150) agrC 1860136..1861419 (-) 1284 WP_099130566.1 quorum-sensing sensor histidine kinase AgrC -
  WOC54_RS09125 (WOC54_09155) agrD 1861449..1861592 (-) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  WOC54_RS09130 (WOC54_09160) - 1861595..1862158 (-) 564 WP_001105696.1 accessory gene regulator AgrB -
  WOC54_RS09135 hld 1862448..1862528 (+) 81 WP_000046022.1 delta-hemolysin -
  WOC54_RS09140 (WOC54_09170) - 1863128..1863913 (-) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  WOC54_RS09145 (WOC54_09175) - 1864274..1864900 (-) 627 WP_000522381.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=971704 WOC54_RS09115 WP_000688492.1 1859401..1860117(-) (agrA) [Staphylococcus aureus strain TUM22701]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=971704 WOC54_RS09115 WP_000688492.1 1859401..1860117(-) (agrA) [Staphylococcus aureus strain TUM22701]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment