Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACK1X7_RS24130 Genome accession   NZ_CP178393
Coordinates   5621478..5623436 (-) Length   652 a.a.
NCBI ID   WP_413115621.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5616478..5628436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS24110 (ACK1X7_24060) - 5616646..5617761 (-) 1116 WP_385139425.1 S1C family serine protease -
  ACK1X7_RS24115 (ACK1X7_24065) - 5618348..5619370 (-) 1023 WP_385139422.1 LacI family DNA-binding transcriptional regulator -
  ACK1X7_RS24120 (ACK1X7_24070) - 5619394..5620206 (-) 813 WP_385139419.1 response regulator transcription factor -
  ACK1X7_RS24125 (ACK1X7_24075) - 5620512..5621438 (+) 927 WP_390795048.1 alpha/beta hydrolase -
  ACK1X7_RS24130 (ACK1X7_24080) rcrQ 5621478..5623436 (-) 1959 WP_413115621.1 ABC transporter ATP-binding protein Regulator
  ACK1X7_RS24135 (ACK1X7_24085) rcrP 5623552..5625294 (-) 1743 WP_385139410.1 ABC transporter ATP-binding protein Regulator
  ACK1X7_RS24140 (ACK1X7_24090) - 5625416..5625691 (+) 276 WP_014053934.1 MoaD/ThiS family protein -
  ACK1X7_RS24145 (ACK1X7_24095) - 5625703..5627112 (+) 1410 WP_413115622.1 hypothetical protein -
  ACK1X7_RS24150 (ACK1X7_24100) - 5627196..5627882 (+) 687 WP_078642750.1 DUF2993 domain-containing protein -
  ACK1X7_RS24155 (ACK1X7_24105) - 5628094..5628174 (+) 81 WP_351229977.1 Ms5788A family Cys-rich leader peptide -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 70227.50 Da        Isoelectric Point: 5.7897

>NTDB_id=971688 ACK1X7_RS24130 WP_413115621.1 5621478..5623436(-) (rcrQ) [Streptomyces sp. CY1]
MSGTSAPRRGPGPAAGPGRFMGGQPTERSLDFRGSGRRLLARLRPERGIALLVLALGTGSVALAVVGPKILGEATDLIFA
GIIGRQLPDGADKEQAVQWLRDRDQGTVADMVASMDVTPGQGIDFHAVGVVLLWATALYVVASILGLVQARVATVIVQRA
VFRLREDVEHKLARLPLSYFDKQSRGEVLSRATNDIDNIQQTLQQTLSQILASLLTIVGVLSMMFWISPLLALVALITVP
VSVWVTTSIGKRAQPQFVAQWKTTGKLNAHIEEMYTGHSLVKVFGREKESAELFREQNDKLYAAGFKAQSISGLIQPSMM
FIGNLNYVLVAVVGGLRVASGALSIGDVQAFVQYSRQFSQPLTQVASMANMVQSGVASAERVFELLDAPEQSAEPVDARR
PEAVRGQVAFEEVSFRYQPDTPLIDGLSLSVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAEMSREEL
RSHIGMVLQDTWLFGGTIAENIAYGARGASFEKVVEAAKATYVDRFVRTLPDGYDSVIDEEGSNVSAGEKQLITIARAFL
SEPSILVLDEATSSVDTRTEVLIQRAMASLRSGRTSFVIAHRLSTIRDADVILVMESGRIVEQGSHDALLAAGGAYARLY
ASQFAEPVAEAE

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=971688 ACK1X7_RS24130 WP_413115621.1 5621478..5623436(-) (rcrQ) [Streptomyces sp. CY1]
ATGAGTGGCACCTCGGCACCTCGCAGGGGTCCGGGGCCCGCCGCCGGGCCCGGCCGGTTCATGGGCGGGCAGCCGACCGA
GCGGTCCCTGGACTTCCGCGGCTCCGGCCGCCGGCTGCTGGCCCGGCTCCGTCCCGAGCGCGGTATCGCGCTGCTGGTGC
TCGCGCTGGGCACGGGCAGCGTCGCGCTCGCGGTGGTGGGTCCGAAGATCCTCGGCGAGGCGACCGACCTGATCTTCGCG
GGCATCATCGGACGGCAGTTGCCCGACGGGGCCGACAAGGAGCAGGCCGTCCAGTGGCTGCGCGACAGGGACCAGGGCAC
GGTCGCCGACATGGTGGCCTCGATGGACGTCACCCCCGGCCAGGGCATCGACTTCCACGCGGTCGGCGTCGTGCTGCTGT
GGGCCACCGCGCTGTATGTCGTCGCCTCGATTCTGGGCCTGGTGCAGGCGCGGGTGGCCACGGTCATCGTCCAGCGGGCG
GTCTTCCGGCTGCGCGAGGACGTGGAGCACAAGCTGGCCCGGCTGCCGCTGTCGTACTTCGACAAGCAGTCGCGCGGTGA
GGTGCTCTCGCGCGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCTCAGCCAGATCCTGGCCTCGC
TGCTGACGATCGTGGGCGTGCTGTCGATGATGTTCTGGATCTCGCCGCTGCTGGCGCTGGTGGCGCTGATCACCGTCCCG
GTCTCGGTGTGGGTGACGACGAGCATCGGCAAGCGCGCCCAGCCGCAGTTCGTCGCCCAGTGGAAGACCACGGGCAAGCT
CAACGCCCATATCGAGGAGATGTACACCGGCCACTCGCTGGTGAAGGTCTTCGGGCGGGAGAAGGAGTCCGCGGAGCTGT
TCCGGGAGCAGAACGACAAGCTCTACGCGGCGGGCTTCAAGGCCCAGTCCATCTCCGGGCTGATCCAGCCCTCGATGATG
TTCATCGGGAACCTCAACTATGTGCTGGTGGCCGTGGTCGGCGGGCTCCGGGTGGCCTCCGGCGCGCTGTCGATCGGCGA
TGTCCAGGCGTTCGTCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTGGCCTCCATGGCCAACATGGTGCAGT
CGGGCGTGGCCTCCGCCGAGCGGGTCTTCGAGCTGCTGGACGCGCCCGAGCAGAGCGCGGAACCGGTGGACGCGCGGCGG
CCGGAGGCGGTGCGGGGGCAGGTCGCGTTCGAGGAGGTCTCCTTCCGCTACCAGCCGGACACGCCGCTCATCGACGGTCT
GTCGCTGTCGGTGCGGCCCGGGCAGACCGTGGCCATCGTCGGCCCGACCGGCGCCGGAAAGACCACGCTGGTCAACCTGC
TGATGCGGTTCTACGAGGTCAGCGGCGGGCGGATCACGCTGGACGGGGTGGACATCGCCGAGATGTCACGCGAGGAGCTG
CGCTCCCATATCGGGATGGTGCTCCAGGACACCTGGCTGTTCGGCGGGACGATCGCCGAGAACATCGCGTACGGCGCGCG
AGGGGCGAGCTTCGAGAAGGTCGTCGAGGCGGCGAAGGCCACCTATGTGGACCGCTTCGTACGGACCCTGCCGGACGGCT
ACGACTCGGTGATCGACGAGGAGGGCTCCAATGTCAGCGCCGGGGAGAAGCAGCTCATCACGATCGCTCGGGCGTTCCTC
TCCGAGCCGTCGATCCTGGTGCTGGACGAGGCCACCAGCTCGGTCGACACCCGTACCGAGGTCCTCATCCAGCGGGCGAT
GGCCTCGCTGCGGAGCGGCCGTACCAGTTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACGTGATCCTGG
TGATGGAGTCGGGGCGGATCGTGGAGCAGGGCTCGCATGACGCGCTGCTCGCGGCGGGCGGTGCGTACGCCCGGCTGTAC
GCGTCCCAGTTCGCGGAGCCGGTGGCGGAGGCCGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(68-362)

ABC transporter (ABC_tran)

(425-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.167

94.632

0.39