Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACK1X7_RS23955 Genome accession   NZ_CP178393
Coordinates   5584658..5586085 (+) Length   475 a.a.
NCBI ID   WP_385139500.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5579658..5591085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS23940 (ACK1X7_23890) - 5580665..5581594 (-) 930 WP_390795037.1 Ppx/GppA family phosphatase -
  ACK1X7_RS23945 (ACK1X7_23895) - 5581804..5582676 (+) 873 WP_413115613.1 hypothetical protein -
  ACK1X7_RS23950 (ACK1X7_23900) - 5582913..5584412 (-) 1500 Protein_4751 sigma-70 family RNA polymerase sigma factor -
  ACK1X7_RS23955 (ACK1X7_23905) radA/sms 5584658..5586085 (+) 1428 WP_385139500.1 DNA repair protein RadA Machinery gene
  ACK1X7_RS23960 (ACK1X7_23910) disA 5586430..5587488 (+) 1059 WP_050993876.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACK1X7_RS23965 (ACK1X7_23915) - 5587705..5588568 (-) 864 WP_390795038.1 hypothetical protein -
  ACK1X7_RS23970 (ACK1X7_23920) - 5588926..5589852 (+) 927 WP_253209426.1 A/G-specific adenine glycosylase -
  ACK1X7_RS23975 (ACK1X7_23925) - 5590086..5590697 (+) 612 WP_364011749.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 49996.97 Da        Isoelectric Point: 7.4052

>NTDB_id=971683 ACK1X7_RS23955 WP_385139500.1 5584658..5586085(+) (radA/sms) [Streptomyces sp. CY1]
MAARSSSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSAALPIGQVDGRQATARGTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYITGEESASQVRLRADRIGALSEHLYLAAETDLS
AVLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LQFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGE
VGLAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGRIPDGMRVLEVADIGDALRVLPRRRERGEKARADAAEARG

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=971683 ACK1X7_RS23955 WP_385139500.1 5584658..5586085(+) (radA/sms) [Streptomyces sp. CY1]
ATGGCTGCCCGTAGCTCCTCCCGCTCATCCGCCAAGGACCGCCCCTCCTACCGCTGCACGGAGTGCGGCTGGACCACCGC
CAAGTGGCTCGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTGCGCACCACCG
CGCCCGGCCGGGTCACCTCGGCCGCCCTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCGCGGGGCACGGGCGTG
GACGAGCTGGACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGCGCGGTCGTGCTGCTCGCCGGGGAGCCCGGGGTCGGCAA
GTCCACGCTGCTGCTGGACGTGGCGGCCAAGGCCGCCTCCGAGGAGCACCGCACGCTCTACATCACCGGTGAGGAGTCGG
CGAGTCAGGTGCGGCTGCGCGCCGACCGCATCGGCGCGCTGAGCGAGCATCTCTACCTCGCCGCCGAGACCGACCTGTCC
GCGGTCCTCGGCCATCTCGACTCGGTCAAGCCCTCGCTGCTCGTCCTGGACTCGGTGCAGACCGTCGCCTCGCCCGAGAT
CGACGGCGCGCCGGGCGGGATGGCGCAGGTGCGCGAGGTGGCCGGGGCACTCATCCGGGCGTCCAAGGAGCGCGGTATGT
CCACGCTGCTGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGGCCCCGGCTGCTGGAGCATCTGGTCGATGTGGTC
CTTCAGTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGGGTGAAGAACCGCTACGGGGCGACGGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCCGGGCTGTTCCTCACCCGCCGCGACGAGC
CGGTGCCCGGCACCTGTCTGACGGTCACCCTGGAGGGCCGTCGGCCGCTGGTGGCCGAGGTGCAGGCGCTCACGGTCGAC
TCCCAGATCCCCTCCCCGCGCCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTTCTGGAGCA
GCGCGGCCGGATCAGCGCGCTGGGCAAGCGGGATATCTACAGCGCCACGGTGGGCGGGGTGAAGCTGTCCGAGCCCGCCG
CGGACCTCGCGGTGGCGCTCGCGCTGGCCAGCGCCGCGAGTGACACCCCGCTGCCCAAGAACCTGGTGGCGATCGGCGAG
GTGGGTCTCGCGGGCGAGGTCCGGCGGGTCACCGGAGTGCAGCGGCGGCTGTCGGAGGCGGCCCGGCTCGGCTTCACCCA
CGCCCTGGTGCCGAGCGACCCGGGCCGGATCCCGGACGGCATGCGGGTGCTGGAGGTCGCGGACATCGGGGACGCGCTGC
GGGTGTTGCCGCGGCGCCGCGAGCGCGGCGAAAAGGCGCGGGCGGACGCGGCGGAGGCCCGTGGCTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

Subunit ChlI of Mg-chelatase (ChlI)

(372-432)

AAA domain (AAA_25)

(86-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

95.368

0.421
  radA Streptococcus mitis NCTC 12261

42.605

95.368

0.406
  radA Streptococcus pneumoniae D39

42.667

94.737

0.404
  radA Streptococcus pneumoniae TIGR4

42.667

94.737

0.404
  radA Streptococcus pneumoniae R6

42.667

94.737

0.404
  radA Streptococcus pneumoniae Rx1

42.667

94.737

0.404
  radA Streptococcus mitis SK321

43.897

89.684

0.394

Multiple sequence alignment