Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACK1X7_RS02425 Genome accession   NZ_CP178393
Coordinates   516926..517198 (-) Length   90 a.a.
NCBI ID   WP_390794306.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 511926..522198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS02395 (ACK1X7_02395) - 512688..513152 (+) 465 WP_385151121.1 low molecular weight protein-tyrosine-phosphatase -
  ACK1X7_RS02400 (ACK1X7_02400) - 513149..514030 (+) 882 WP_398159249.1 fructosamine kinase family protein -
  ACK1X7_RS02405 (ACK1X7_02405) - 514192..515196 (+) 1005 WP_390794305.1 endonuclease/exonuclease/phosphatase family protein -
  ACK1X7_RS02410 (ACK1X7_02410) - 515436..515633 (-) 198 WP_413114577.1 hypothetical protein -
  ACK1X7_RS02415 (ACK1X7_02415) - 515738..516163 (-) 426 WP_385154484.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACK1X7_RS02420 (ACK1X7_02420) - 516267..516908 (+) 642 WP_413114578.1 MBL fold metallo-hydrolase -
  ACK1X7_RS02425 (ACK1X7_02425) cytR 516926..517198 (-) 273 WP_390794306.1 substrate-binding domain-containing protein Regulator
  ACK1X7_RS02430 (ACK1X7_02430) - 517388..518113 (+) 726 WP_385154493.1 D-2-hydroxyacid dehydrogenase -
  ACK1X7_RS02435 (ACK1X7_02435) - 518571..518771 (+) 201 Protein_485 NAD(P)-binding domain-containing protein -
  ACK1X7_RS02440 (ACK1X7_02440) - 518866..519420 (+) 555 WP_413114579.1 NAD-binding protein -
  ACK1X7_RS02445 (ACK1X7_02445) otnK 519422..520702 (+) 1281 WP_413114580.1 3-oxo-tetronate kinase -
  ACK1X7_RS02450 (ACK1X7_02450) - 520699..521373 (+) 675 WP_385154502.1 aldolase -

Sequence

Protein


Download         Length: 90 a.a.        Molecular weight: 9555.83 Da        Isoelectric Point: 4.3063

>NTDB_id=971643 ACK1X7_RS02425 WP_390794306.1 516926..517198(-) (cytR) [Streptomyces sp. CY1]
MAFGAMAALAESGLRIPEDLSVIGCDDISVDDLPSSRRLTTATMARDELDRQAARRLESLMAADGDTEPRSIPMELRVRL
TSAPPAASPG

Nucleotide


Download         Length: 273 bp        

>NTDB_id=971643 ACK1X7_RS02425 WP_390794306.1 516926..517198(-) (cytR) [Streptomyces sp. CY1]
GTGGCATTCGGTGCGATGGCGGCGTTGGCGGAGTCGGGCCTGCGGATCCCCGAAGACCTCTCGGTGATCGGCTGCGATGA
CATCTCCGTTGACGACCTGCCCAGTTCGCGCCGACTCACCACGGCCACGATGGCCCGGGACGAACTGGACAGGCAGGCAG
CCCGCCGACTGGAATCCTTGATGGCCGCCGATGGCGACACCGAACCCCGATCGATTCCGATGGAGCTTCGTGTGCGGCTC
ACCAGCGCGCCGCCCGCGGCATCGCCGGGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(1-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

40.698

95.556

0.389
  cytR Vibrio cholerae C6706

40.23

96.667

0.389

Multiple sequence alignment