Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACK1X7_RS00460 Genome accession   NZ_CP178393
Coordinates   85087..86103 (-) Length   338 a.a.
NCBI ID   WP_413114483.1    Uniprot ID   -
Organism   Streptomyces sp. CY1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 80087..91103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1X7_RS00440 (ACK1X7_00440) - 80850..82268 (-) 1419 WP_385156826.1 non-reducing end alpha-L-arabinofuranosidase family hydrolase -
  ACK1X7_RS00445 (ACK1X7_00445) - 82483..83508 (-) 1026 WP_385156824.1 endo-1,4-beta-xylanase -
  ACK1X7_RS00450 (ACK1X7_00450) - 83575..84483 (-) 909 WP_390795359.1 alpha/beta hydrolase family protein -
  ACK1X7_RS00455 (ACK1X7_00455) - 84516..84848 (-) 333 WP_398159136.1 hypothetical protein -
  ACK1X7_RS00460 (ACK1X7_00460) cytR 85087..86103 (-) 1017 WP_413114483.1 LacI family DNA-binding transcriptional regulator Regulator
  ACK1X7_RS00465 (ACK1X7_00465) - 86749..87714 (+) 966 WP_385158083.1 glycoside hydrolase family 6 protein -
  ACK1X7_RS00470 (ACK1X7_00470) - 87708..87887 (-) 180 WP_385158085.1 hypothetical protein -
  ACK1X7_RS00475 (ACK1X7_00475) - 88096..89286 (-) 1191 WP_413114484.1 alginate lyase family protein -
  ACK1X7_RS00480 (ACK1X7_00480) - 89381..89908 (-) 528 WP_413114485.1 hypothetical protein -
  ACK1X7_RS00485 (ACK1X7_00485) - 90003..90395 (+) 393 WP_413114486.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36214.06 Da        Isoelectric Point: 6.1753

>NTDB_id=971638 ACK1X7_RS00460 WP_413114483.1 85087..86103(-) (cytR) [Streptomyces sp. CY1]
MDSGKGARSGGPTSVKIAHIAELAGVSVPTVSRVLNGRPGVSDETRARVEDLINEYGYRKSSDNKQRFVELIFRELESMW
VGEIIRGVEEAARRNHAGVVVSKFGLHDADASVDDTVGRRPLCVLSVFQLPEAERERFKAKGIPYVVFDPVDDVPDGVPY
VGATNFKGGQSATRHALSLGHRRIAMIDGPDHAFCLARAAGYRSALEAAGLPVDPDLTVRAQLTREGGQIAARTLLGRSE
RPTAIVTANDMQALGVYQAAREAGLRVPEDLSVVGFDDMPVAVWADPPLTTVHQPLSEMGAAATELALALGRGERVPQLG
LEIATELVVRQSTAPPRS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=971638 ACK1X7_RS00460 WP_413114483.1 85087..86103(-) (cytR) [Streptomyces sp. CY1]
GTGGACAGCGGGAAGGGCGCGCGGAGTGGCGGGCCGACGTCGGTGAAGATCGCGCACATAGCCGAGTTGGCGGGTGTGTC
GGTGCCCACGGTGTCGCGGGTGCTCAATGGCCGGCCAGGGGTGTCCGACGAGACCCGGGCCCGGGTCGAGGACCTGATCA
ACGAGTACGGATACCGTAAGTCCTCGGACAACAAGCAGAGGTTCGTGGAGCTGATCTTCCGCGAGCTGGAGAGCATGTGG
GTGGGGGAGATCATCCGCGGTGTCGAGGAGGCGGCCCGCAGGAACCACGCGGGCGTCGTGGTCTCCAAGTTCGGCCTGCA
CGACGCCGACGCCTCGGTCGACGACACCGTGGGGCGACGCCCGCTGTGTGTCCTGTCCGTGTTCCAGCTCCCTGAAGCGG
AACGGGAGCGATTCAAGGCGAAAGGCATCCCTTACGTCGTCTTCGATCCGGTCGACGACGTTCCCGACGGTGTGCCCTAT
GTCGGTGCCACCAACTTCAAGGGAGGCCAGTCCGCGACGCGCCACGCGCTGTCCCTCGGGCACCGGCGCATCGCGATGAT
CGACGGTCCCGATCACGCGTTCTGCCTGGCCCGGGCGGCGGGCTACCGGTCCGCTCTCGAGGCGGCCGGACTGCCCGTGG
ACCCGGATCTGACGGTCCGTGCCCAACTCACGCGGGAGGGCGGCCAGATCGCGGCCCGCACCCTGCTCGGCAGGTCCGAA
CGGCCCACCGCGATCGTCACCGCGAACGACATGCAGGCGCTCGGCGTCTATCAGGCGGCCCGCGAGGCCGGGCTTCGTGT
CCCGGAGGACCTGAGCGTGGTCGGTTTCGACGACATGCCGGTCGCTGTCTGGGCGGATCCGCCGTTGACGACGGTGCATC
AGCCCTTGAGTGAAATGGGCGCTGCCGCAACGGAGTTGGCCCTCGCGCTGGGCCGCGGCGAGAGGGTTCCGCAGCTCGGT
CTGGAGATCGCCACGGAACTCGTGGTCCGCCAGAGCACGGCACCGCCGAGGAGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-333)

Bacterial regulatory proteins, lacI family (LacI)

(17-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.047

100

0.367
  cytR Vibrio cholerae C6706

36.905

99.408

0.367

Multiple sequence alignment